RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 COLQQ9Y215 455 aaPredicted RBP10.97□□□□□ -0.65
UPF2-204ENST00000460569 FAN1Q9Y2M0 1017 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 YBX2Q9Y2T7 364 aaKnown RBP10.97□□□□□ -0.65
UPF2-204ENST00000460569 PLXNA4Q9HCM2 1894 aa10.97□□□□□ -0.65
UPF2-204ENST00000460569 COL4A4P53420 1690 aaPredicted RBP10.96□□□□□ -0.65
UPF2-204ENST00000460569 A0A1W2PPC1 479 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 ANO9A1A5B4 782 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 LGALS16A8MUM7 142 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 NT5C1B-RDH14C9J2C7 533 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 F8W810 466 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 NRP1O14786 923 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 P4HA2O15460 535 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 B3GAT3O94766 335 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 KIF4AO95239 1232 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 VNN1O95497 513 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 ALDH2P05091 517 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 GALTP07902 379 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 CTNNB1P35222 781 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 ALDH7A1P49419 539 aaKnown RBP10.96□□□□□ -0.65
UPF2-204ENST00000460569 FANCCQ00597 558 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 PLCB2Q00722 1185 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 NCOA4Q13772 614 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 UPP1Q16831 310 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 FKBP15Q5T1M5 1219 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 KCNT2Q6UVM3 1135 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 APTXQ7Z2E3 356 aaKnown RBP10.96□□□□□ -0.65
UPF2-204ENST00000460569 C3orf58Q8NDZ4 430 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 CXorf38Q8TB03 319 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 TAS1R2Q8TE23 839 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 COLEC11Q9BWP8 271 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 IMPG2Q9BZV3 1241 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 NKX2-4Q9H2Z4 354 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.96□□□□□ -0.657e-12■■■■■ 75.5
UPF2-204ENST00000460569 GCNT4Q9P109 453 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 MTUS1Q9ULD2 1270 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 NUB1Q9Y5A7 615 aa10.96□□□□□ -0.65
UPF2-204ENST00000460569 CARNS1A5YM72 827 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 TMEM189-UBE2V1I3L0A0 370 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 PIRO00625 290 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 ARHGEF15O94989 841 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 CST3P01034 146 aaPredicted RBP10.95□□□□□ -0.66
UPF2-204ENST00000460569 ITGB1P05556 798 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 LINC00271P0C7V0 271 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 DNAJB2P25686 324 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 PPM1AP35813 382 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 PNPLA4P41247 253 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 TAF6P49848 677 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 MYL6P60660 151 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 SMAD3P84022 425 aaKnown RBP10.95□□□□□ -0.66
UPF2-204ENST00000460569 MYO1EQ12965 1108 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 ZNF699Q32M78 642 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 SV2CQ496J9 727 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 EPC2Q52LR7 807 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 PPP2R2DQ66LE6 453 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 SCARA3Q6AZY7 606 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 DCLRE1AQ6PJP8 1040 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 TMEM173Q86WV6 379 aaPredicted RBP10.95□□□□□ -0.66
UPF2-204ENST00000460569 PIAS4Q8N2W9 510 aaPredicted RBP10.95□□□□□ -0.66
UPF2-204ENST00000460569 LRRC52Q8N7C0 313 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 CCDC150Q8NCX0 1101 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 SEMA4DQ92854 862 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 CLP1Q92989 425 aaKnown RBP10.95□□□□□ -0.66
UPF2-204ENST00000460569 ELMO3Q96BJ8 720 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 TMEM169Q96HH4 297 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 HPDLQ96IR7 371 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 C17orf80Q9BSJ5 609 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 CRACR2AQ9BSW2 395 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 PI4K2AQ9BTU6 479 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 MARCH5Q9NX47 278 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 RAB20Q9NX57 234 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 IFNKQ9P0W0 207 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 ADAM28Q9UKQ2 775 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 COQ4Q9Y3A0 265 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 RWDD3Q9Y3V2 267 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 PCDHB12Q9Y5F1 795 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 TRIOBPQ9H2D6 2365 aa10.95□□□□□ -0.66
UPF2-204ENST00000460569 VWA8A3KMH1 1905 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 A0A1B0GTH6 734 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 GTPBP10A4D1E9 387 aaKnown RBP10.94□□□□□ -0.66
UPF2-204ENST00000460569 LRRC10BA6NIK2 292 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 I3L4J1 428 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 PMM2O15305 246 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 LRRN2O75325 713 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 TADA2AO75478 443 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 ASS1P00966 412 aaKnown RBP10.94□□□□□ -0.66
UPF2-204ENST00000460569 IGFBP6P24592 240 aaPredicted RBP10.94□□□□□ -0.66
UPF2-204ENST00000460569 ATICP31939 592 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 BRCC3P46736 316 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 UBASH3AP57075 661 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 LILRA4P59901 499 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 NOP14P78316 857 aaKnown RBP10.94□□□□□ -0.66
UPF2-204ENST00000460569 TAP1Q03518 808 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 UBXN1Q04323 297 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 EXOC3L4Q17RC7 722 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 ZNF667Q5HYK9 610 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 WDR44Q5JSH3 913 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 SPOPLQ6IQ16 392 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 FUT10Q6P4F1 479 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 DSTYKQ6XUX3 929 aa10.94□□□□□ -0.66
UPF2-204ENST00000460569 GBP6Q6ZN66 633 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms