RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 LRRC4CQ9HCJ2 640 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 PDGFCQ9NRA1 345 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 STAM2O75886 525 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 HSPA9P38646 679 aaKnown RBP12.73□□□□□ -0.37
SMPD4-213ENST00000454468 FBXW10Q5XX13 1052 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 EFCAB12Q6NXP0 572 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 ABHD15Q6UXT9 468 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 SRRM1Q8IYB3 904 aaKnown RBP12.73□□□□□ -0.37
SMPD4-213ENST00000454468 MCOLN2Q8IZK6 566 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 MTMR14Q8NCE2 650 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 CPB2Q96IY4 423 aa12.73□□□□□ -0.37
SMPD4-213ENST00000454468 ELAC2Q9BQ52 826 aaKnown RBP12.73□□□□□ -0.37
SMPD4-213ENST00000454468 PTPRJQ12913 1337 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 VTNP04004 478 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 ZSCAN5DPP0CG00 497 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 FDX1P10109 184 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 CHRM1P11229 460 aaPredicted RBP12.72□□□□□ -0.37
SMPD4-213ENST00000454468 TMED2Q15363 201 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 PPP2R5EQ16537 467 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 CLEC16AQ2KHT3 1053 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 UBAP2Q5T6F2 1119 aaKnown RBP12.72□□□□□ -0.37
SMPD4-213ENST00000454468 DPP9Q86TI2 863 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 MMP19Q99542 508 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 MRPL4Q9BYD3 311 aaKnown RBP12.72□□□□□ -0.37
SMPD4-213ENST00000454468 TMBIM4Q9HC24 238 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 MRPL47Q9HD33 250 aaKnown RBP12.72□□□□□ -0.37
SMPD4-213ENST00000454468 RPTORQ8N122 1335 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 PODXLO00592 558 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 PSMA2P25787 234 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 GPC3P51654 580 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 ITGA8P53708 1063 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 SLC20A2Q08357 652 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 CAPSQ13938 189 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 DUOXA2Q1HG44 320 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 UBA3Q8TBC4 463 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 ZNF473Q8WTR7 871 aaKnown RBP12.72□□□□□ -0.37
SMPD4-213ENST00000454468 ANKRD36BP1Q96IX9 119 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 RPF1Q9H9Y2 349 aaKnown RBP12.72□□□□□ -0.37
SMPD4-213ENST00000454468 UVRAGQ9P2Y5 699 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 NOCTQ9UK39 431 aaKnown RBP12.72□□□□□ -0.37
SMPD4-213ENST00000454468 POLIQ9UNA4 740 aa12.72□□□□□ -0.37
SMPD4-213ENST00000454468 CXCL8P10145 99 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 GZMAP12544 262 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 CHN1P15882 459 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 RGS7P49802 495 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 B3GNT9Q6UX72 402 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 LRRN4Q8WUT4 740 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 TIPINQ9BVW5 301 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 OSBPL8Q9BZF1 889 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 ASCC2Q9H1I8 757 aaPredicted RBP12.71□□□□□ -0.37
SMPD4-213ENST00000454468 SAYSD1Q9NPB0 183 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 CTNNAL1Q9UBT7 734 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 R3HDM2Q9Y2K5 976 aaKnown RBP12.71□□□□□ -0.37
SMPD4-213ENST00000454468 STXBP5LQ9Y2K9 1186 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 LDHAP00338 332 aaKnown RBP12.71□□□□□ -0.37
SMPD4-213ENST00000454468 ATP11AP98196 1134 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 DHX34Q14147 1143 aaKnown RBP12.71□□□□□ -0.37
SMPD4-213ENST00000454468 AMHR2Q16671 573 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 ANKMY2Q8IV38 441 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 CCDC13Q8IYE1 715 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 CACNA2D3Q8IZS8 1091 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.71□□□□□ -0.37
SMPD4-213ENST00000454468 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.71□□□□□ -0.37
SMPD4-213ENST00000454468 VTI1AQ96AJ9 217 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 TRIM6Q9C030 488 aaPredicted RBP12.71□□□□□ -0.37
SMPD4-213ENST00000454468 KIAA1586Q9HCI6 787 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 PARP2Q9UGN5 583 aa12.71□□□□□ -0.37
SMPD4-213ENST00000454468 BRWD3Q6RI45 1802 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 GMNCA6NCL1 334 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 SPATA31C2B4DYI2 1134 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 F8VP50 259 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 ZNF286BP0CG31 522 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 ETS1P14921 441 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 GARTP22102 1010 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 YARSP54577 528 aaKnown RBP12.71□□□□□ -0.38
SMPD4-213ENST00000454468 LAMTOR4Q0VGL1 99 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 GPS1Q13098 491 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 MYBPC2Q14324 1141 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 FAM133BQ5BKY9 247 aaKnown RBP12.71□□□□□ -0.38
SMPD4-213ENST00000454468 SLFN11Q7Z7L1 901 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 CCDC89Q8N998 374 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 TMC2Q8TDI7 906 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 ZNF606Q8WXB4 792 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 PIK3R5Q8WYR1 880 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 PRMT1Q99873 361 aaKnown RBP12.71□□□□□ -0.38
SMPD4-213ENST00000454468 MAK16Q9BXY0 300 aaKnown RBP12.71□□□□□ -0.38
SMPD4-213ENST00000454468 APOBEC3GQ9HC16 384 aaKnown RBP12.71□□□□□ -0.38
SMPD4-213ENST00000454468 SAMD15Q9P1V8 674 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 AFG3L2Q9Y4W6 797 aa12.71□□□□□ -0.38
SMPD4-213ENST00000454468 ZC3H4Q9UPT8 1303 aaKnown RBP12.7□□□□□ -0.38
SMPD4-213ENST00000454468 WDR91A4D1P6 747 aa12.7□□□□□ -0.38
SMPD4-213ENST00000454468 FAM187AA6NFU0 413 aa12.7□□□□□ -0.38
SMPD4-213ENST00000454468 BTNL10A8MVZ5 291 aa12.7□□□□□ -0.38
SMPD4-213ENST00000454468 KIAA0391O15091 583 aaKnown RBP12.7□□□□□ -0.38
SMPD4-213ENST00000454468 TAS2R40P59535 323 aa12.7□□□□□ -0.38
SMPD4-213ENST00000454468 ZNF280AP59817 542 aaPredicted RBP12.7□□□□□ -0.38
SMPD4-213ENST00000454468 PSMC1P62191 440 aaKnown RBP12.7□□□□□ -0.38
SMPD4-213ENST00000454468 PTGISQ16647 500 aa12.7□□□□□ -0.38
SMPD4-213ENST00000454468 ZNF667Q5HYK9 610 aa12.7□□□□□ -0.38
SMPD4-213ENST00000454468 GLRA4Q5JXX5 417 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms