RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ACKR2O00590 384 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 TMEM253P0C7T8 217 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 CHRNA3P32297 505 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ACADSBP45954 432 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SLCO1A2P46721 670 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ALDH7A1P49419 539 aaKnown RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 PIGHQ14442 188 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 MGAT5BQ3V5L5 792 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 HEATR6Q6AI08 1181 aaKnown RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 C1orf54Q8WWF1 131 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 TNFRSF25Q93038 417 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SNX12Q9UMY4 172 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 PI4K2BG5E9Z4 385 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 RNF40O75150 1001 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 THP07101 528 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 HOXC6P09630 235 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ODC1P11926 461 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 GNGT1P63211 74 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 C1orf228Q6PIY5 440 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ANKRD23Q86SG2 305 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SH3TC2Q8TF17 1288 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SEPT8Q92599 483 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 CABS1Q96KC9 395 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 PORCNQ9H237 461 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SNTG2Q9NY99 539 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ATP11BQ9Y2G3 1177 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 PRRG1O14668 218 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SGPL1O95470 568 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 MCF2P10911 925 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 CLCN6P51797 869 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 MDM2Q00987 491 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 TMED2Q15363 201 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ZPBP2Q6X784 338 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF410Q86VK4 478 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 PPP4R1Q8TF05 950 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SKA2Q8WVK7 121 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 DUSP9Q99956 384 aaKnown RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 COLEC11Q9BWP8 271 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ZMYND15Q9H091 742 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 EXOC1LA0A1B0GW35 172 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ACSL3O95573 720 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 FAM200BP0CF97 657 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 GHRP10912 638 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ZFXP17010 805 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 MYL6P60660 151 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 AP1B1Q10567 949 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ORC1Q13415 861 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 FAM110CQ1W6H9 321 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 FIGNQ5HY92 759 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 GJC2Q5T442 439 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 RNF219Q5W0B1 726 aaPredicted RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 EMBQ6PCB8 327 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 CCDC137Q6PK04 289 aaKnown RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 CXCL17Q6UXB2 119 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 C1orf131Q8NDD1 294 aaKnown RBP7.83□□□□□ -1.16
SYNE1-213ENST00000448038 APBA2Q99767 749 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 EPAS1Q99814 870 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 SAYSD1Q9NPB0 183 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 TBK1Q9UHD2 729 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 ATRNL1Q5VV63 1379 aa7.83□□□□□ -1.16
SYNE1-213ENST00000448038 COL1A1P02452 1464 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 LTBP3Q9NS15 1303 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ATP8B1O43520 1251 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 PQBP1O60828 265 aaKnown RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TROVE2P10155 538 aaKnown RBP eCLIP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ARL4CP56559 192 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ADCY1Q08828 1119 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 VSIG1Q86XK7 387 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 DNAJC7Q99615 494 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SPON2Q9BUD6 331 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 RNF208Q9H0X6 261 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 PLEKHA5Q9HAU0 1116 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 MRFAP1Q9Y605 127 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SNCAIPQ9Y6H5 919 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 A0A087X0T9 212 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 EGFRP00533 1210 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 PGK1P00558 417 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 FAM228BP0C875 321 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ROR1Q01973 937 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 PTGISQ16647 500 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 PAN2Q504Q3 1202 aaKnown RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CYP4A22Q5TCH4 519 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SPRYD7Q5W111 196 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SPOPLQ6IQ16 392 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 PCGF5Q86SE9 256 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ACOT1Q86TX2 421 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ZC3H18Q86VM9 953 aaKnown RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 MAP4K3Q8IVH8 894 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 RCOR2Q8IZ40 523 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 TMEM169Q96HH4 297 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ZBTB45Q96K62 511 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 RILPQ96NA2 401 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 NMRK2Q9NPI5 230 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 SMYD2Q9NRG4 433 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CHORDC1Q9UHD1 332 aaPredicted RBP7.82□□□□□ -1.16
SYNE1-213ENST00000448038 CYB561D2O14569 222 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 APOL1O14791 398 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ZNF185O15231 689 aa7.82□□□□□ -1.16
SYNE1-213ENST00000448038 ZBTB48P10074 688 aaPredicted RBP7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms