RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ATXN2Q99700 1313 aaKnown RBP12.58□□□□□ -0.4
MSH6-204ENST00000445503 A0A1B0GUL6 1792 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 MT-ND3P03897 115 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 SRGAP2CP0DJJ0 459 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 CHRNB2P17787 502 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 PHBP35232 272 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 JAK3P52333 1124 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 IRX4P78413 519 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 UGCGQ16739 394 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 CLEC16AQ2KHT3 1053 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 TSNAXIP1Q2TAA8 658 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 KRT27Q7Z3Y8 459 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 MCOLN2Q8IZK6 566 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 ATXN2LQ8WWM7 1075 aaKnown RBP12.58□□□□□ -0.4
MSH6-204ENST00000445503 MCEEQ96PE7 176 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 NUDCD1Q96RS6 583 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 YIPF3Q9GZM5 350 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.58□□□□□ -0.43e-10■■■■■ 28.1
MSH6-204ENST00000445503 AGAP1Q9UPQ3 857 aa12.58□□□□□ -0.4
MSH6-204ENST00000445503 CLGNO14967 610 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 KRT76Q01546 638 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 SPP2Q13103 211 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 XRCC4Q13426 336 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 SMAD1Q15797 465 aaKnown RBP12.57□□□□□ -0.4
MSH6-204ENST00000445503 RBBP8NLQ8NC74 664 aaPredicted RBP12.57□□□□□ -0.4
MSH6-204ENST00000445503 SLC7A3Q8WY07 619 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 HSPH1Q92598 858 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 RILPQ96NA2 401 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 KIF9Q9HAQ2 790 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 UBN1Q9NPG3 1134 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 RNF146Q9NTX7 359 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 ZFP69BQ9UJL9 534 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 STRCP1A6NGW2 1772 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 PAPPAQ13219 1627 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 H7C0C1 242 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 PSMA2P25787 234 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 ATP5OP48047 213 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 NOVP48745 357 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 BSPRYQ5W0U4 402 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 TATDN1Q6P1N9 297 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 LONP2Q86WA8 852 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 ERICH1Q86X53 443 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 RHPN2Q8IUC4 686 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 CDAN1Q8IWY9 1227 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 THNSL1Q8IYQ7 743 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 BORCS6Q96GS4 357 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 PAGR1Q9BTK6 254 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 SLCO1B3Q9NPD5 702 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 PHTF1Q9UMS5 762 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 ATP9AO75110 1047 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 GSTA1P08263 222 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 KRT16P08779 473 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 PAX7P23759 505 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 SLC1A1P43005 524 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 POU5F1Q01860 360 aaKnown RBP12.57□□□□□ -0.4
MSH6-204ENST00000445503 ZNF317Q96PQ6 595 aaPredicted RBP12.57□□□□□ -0.4
MSH6-204ENST00000445503 TARS2Q9BW92 718 aaKnown RBP12.57□□□□□ -0.4
MSH6-204ENST00000445503 GPR88Q9GZN0 384 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 TRPC5Q9UL62 973 aaPredicted RBP12.57□□□□□ -0.4
MSH6-204ENST00000445503 SCINQ9Y6U3 715 aa12.57□□□□□ -0.4
MSH6-204ENST00000445503 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.56□□□□□ -0.4
MSH6-204ENST00000445503 INHBAP08476 426 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 TMEM191BP0C7N4 346 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 MARK3P27448 753 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PEX5P50542 639 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 NFX1Q12986 1120 aaKnown RBP12.56□□□□□ -0.4
MSH6-204ENST00000445503 CYP4A22Q5TCH4 519 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PPFIBP2Q8ND30 876 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 SHC3Q92529 594 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 SPOCK2Q92563 424 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PPP1R16BQ96T49 567 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 TMEM121Q9BTD3 319 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 AGO4Q9HCK5 861 aaKnown RBP12.56□□□□□ -0.4
MSH6-204ENST00000445503 PIK3R2O00459 728 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 BAG2O95816 211 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PSAPP07602 524 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PAEPP09466 180 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 SLC15A2Q16348 729 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PKN2Q16513 984 aaKnown RBP12.56□□□□□ -0.4
MSH6-204ENST00000445503 KCNT1Q5JUK3 1230 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 C6orf163Q5TEZ5 329 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PCNX4Q63HM2 1172 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 LVRNQ6Q4G3 990 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PLEKHO2Q8TD55 490 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 RBM41Q96IZ5 413 aaKnown RBP12.56□□□□□ -0.4
MSH6-204ENST00000445503 ATP6V0A4Q9HBG4 840 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 MAD1L1Q9Y6D9 718 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 C5orf60A6NFR6 353 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 PIK3CDO00329 1044 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 NCALDP61601 193 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 CYP24A1Q07973 514 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 HADHQ16836 314 aaKnown RBP12.56□□□□□ -0.4
MSH6-204ENST00000445503 NIM1KQ8IY84 436 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 ZDHHC14Q8IZN3 488 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 CYP4X1Q8N118 509 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 KCTD17Q8N5Z5 321 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 MAML1Q92585 1016 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 CFAP36Q96G28 342 aa12.56□□□□□ -0.4
MSH6-204ENST00000445503 SAE1Q9UBE0 346 aaPredicted RBP12.56□□□□□ -0.4
MSH6-204ENST00000445503 O00370 1275 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms