RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 COLGALT1Q8NBJ5 622 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 FBXL13Q8NEE6 735 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 CXorf38Q8TB03 319 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 CLP1Q92989 425 aaKnown RBP17.01■□□□□ 0.31
USP40-206ENST00000443711 SIX4Q9UIU6 781 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 COQ4Q9Y3A0 265 aa17.01■□□□□ 0.31
USP40-206ENST00000443711 KIAA1671Q9BY89 1806 aa17■□□□□ 0.31
USP40-206ENST00000443711 LINC01553A4QN01 128 aa17■□□□□ 0.31
USP40-206ENST00000443711 LGALS16A8MUM7 142 aa17■□□□□ 0.31
USP40-206ENST00000443711 VNN1O95497 513 aa17■□□□□ 0.31
USP40-206ENST00000443711 MYOGP15173 224 aa17■□□□□ 0.31
USP40-206ENST00000443711 PAX3P23760 479 aa17■□□□□ 0.31
USP40-206ENST00000443711 ATICP31939 592 aa17■□□□□ 0.31
USP40-206ENST00000443711 PNPLA4P41247 253 aa17■□□□□ 0.31
USP40-206ENST00000443711 PIK3CAP42336 1068 aa17■□□□□ 0.31
USP40-206ENST00000443711 SMAD3P84022 425 aaKnown RBP17■□□□□ 0.31
USP40-206ENST00000443711 FKBP15Q5T1M5 1219 aa17■□□□□ 0.31
USP40-206ENST00000443711 NLRC5Q86WI3 1866 aa17■□□□□ 0.31
USP40-206ENST00000443711 TMEM130Q8N3G9 435 aa17■□□□□ 0.31
USP40-206ENST00000443711 TAS1R2Q8TE23 839 aa17■□□□□ 0.31
USP40-206ENST00000443711 RABGGTAQ92696 567 aa17■□□□□ 0.31
USP40-206ENST00000443711 ZNF560Q96MR9 790 aa17■□□□□ 0.31
USP40-206ENST00000443711 PAAF1Q9BRP4 392 aa17■□□□□ 0.31
USP40-206ENST00000443711 PBX4Q9BYU1 374 aa17■□□□□ 0.31
USP40-206ENST00000443711 RAB20Q9NX57 234 aa17■□□□□ 0.31
USP40-206ENST00000443711 CACNG4Q9UBN1 327 aa17■□□□□ 0.31
USP40-206ENST00000443711 COLQQ9Y215 455 aaPredicted RBP17■□□□□ 0.31
USP40-206ENST00000443711 PRG3Q9Y2Y8 225 aaPredicted RBP17■□□□□ 0.31
USP40-206ENST00000443711 RWDD3Q9Y3V2 267 aa17■□□□□ 0.31
USP40-206ENST00000443711 PCDHB12Q9Y5F1 795 aa17■□□□□ 0.31
USP40-206ENST00000443711 GTPBP10A4D1E9 387 aaKnown RBP16.99■□□□□ 0.31
USP40-206ENST00000443711 TMEM189-UBE2V1I3L0A0 370 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 TADA2AO75478 443 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 B3GAT3O94766 335 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 CA3P07451 260 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 TAF6P49848 677 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 UBASH3AP57075 661 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 MYL6P60660 151 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 MYO1EQ12965 1108 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 SGSM1Q2NKQ1 1148 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 SV2CQ496J9 727 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 EPC2Q52LR7 807 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 GBP6Q6ZN66 633 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 CCDC150Q8NCX0 1101 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 EHBP1Q8NDI1 1231 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 TAF4BQ92750 862 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 HPDLQ96IR7 371 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 SAMD11Q96NU1 681 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 IMPG2Q9BZV3 1241 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 RTN4Q9NQC3 1192 aaKnown RBP16.99■□□□□ 0.31
USP40-206ENST00000443711 SPG21Q9NZD8 308 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 YBX2Q9Y2T7 364 aaKnown RBP16.99■□□□□ 0.31
USP40-206ENST00000443711 NUB1Q9Y5A7 615 aa16.99■□□□□ 0.31
USP40-206ENST00000443711 NT5C1B-RDH14C9J2C7 533 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 PPEF2O14830 753 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 STAU1O95793 577 aaKnown RBP16.98■□□□□ 0.31
USP40-206ENST00000443711 PPM1AP35813 382 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 BMPR1AP36894 532 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 PBX2P40425 430 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 UBXN1Q04323 297 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 WDR44Q5JSH3 913 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 SCARA3Q6AZY7 606 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 SLC39A11Q8N1S5 342 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 SEMA4DQ92854 862 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 NKX2-4Q9H2Z4 354 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 ADAM28Q9UKQ2 775 aa16.98■□□□□ 0.31
USP40-206ENST00000443711 A0A1B0GTH6 734 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 CBFA2T2O43439 604 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 TRAPPC3O43617 180 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 CLSTN1O94985 981 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 KIF4AO95239 1232 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 ASS1P00966 412 aaKnown RBP16.97■□□□□ 0.31
USP40-206ENST00000443711 TPM3P06753 285 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 LINC00271P0C7V0 271 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 CTNNB1P35222 781 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 PBX3P40426 434 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 LILRA4P59901 499 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 PLCB2Q00722 1185 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 EXOC3L4Q17RC7 722 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 ZNF699Q32M78 642 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 LRIT3Q3SXY7 679 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 CD300LGQ6UXG3 332 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 C3orf58Q8NDZ4 430 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 IGSF21Q96ID5 467 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 NAP1L5Q96NT1 182 aaPredicted RBP16.97■□□□□ 0.31
USP40-206ENST00000443711 TGS1Q96RS0 853 aaKnown RBP16.97■□□□□ 0.31
USP40-206ENST00000443711 CRACR2AQ9BSW2 395 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 PLVAPQ9BX97 442 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 INTS2Q9H0H0 1204 aaKnown RBP16.97■□□□□ 0.31
USP40-206ENST00000443711 XYLT2Q9H1B5 865 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 SLC28A3Q9HAS3 691 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 IFNKQ9P0W0 207 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 GCNT4Q9P109 453 aa16.97■□□□□ 0.31
USP40-206ENST00000443711 KPNA7A9QM74 516 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 RB1P06400 928 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 ERVK-21P61565 698 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 TAP1Q03518 808 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 KRT17Q04695 432 aa16.96■□□□□ 0.31
USP40-206ENST00000443711 ELAVL2Q12926 359 aaKnown RBP16.96■□□□□ 0.31
USP40-206ENST00000443711 NR1I3Q14994 352 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms