RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 CHST7Q9NS84 486 aa17.33■□□□□ 0.36
USP39-205ENST00000442708 STXBP5LQ9Y2K9 1186 aa17.33■□□□□ 0.36
USP39-205ENST00000442708 FRMD4BQ9Y2L6 1034 aa17.33■□□□□ 0.36
USP39-205ENST00000442708 TSC2P49815 1807 aa17.33■□□□□ 0.36
USP39-205ENST00000442708 C2orf71A6NGG8 1288 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 CETN3O15182 167 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 MAPK13O15264 365 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 LILRB3O75022 631 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 CXCL14O95715 111 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 ITGB3P05106 788 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 PSMC2P35998 433 aaKnown RBP17.32■□□□□ 0.36
USP39-205ENST00000442708 MCCD1P59942 119 aaPredicted RBP17.32■□□□□ 0.36
USP39-205ENST00000442708 CLDN10P78369 228 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 FKBP3Q00688 224 aaKnown RBP17.32■□□□□ 0.36
USP39-205ENST00000442708 SURF1Q15526 300 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 PTPN14Q15678 1187 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 KLHL40Q2TBA0 621 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 RTP2Q5QGT7 225 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 FAM171A1Q5VUB5 890 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 KIAA0319Q5VV43 1072 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 MRPL43Q8N983 215 aaKnown RBP17.32■□□□□ 0.36
USP39-205ENST00000442708 TMC2Q8TDI7 906 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 MICAL1Q8TDZ2 1067 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 FNBP1Q96RU3 617 aa17.32■□□□□ 0.36
USP39-205ENST00000442708 NSUN3Q9H649 340 aaKnown RBP17.32■□□□□ 0.36
USP39-205ENST00000442708 UNC80Q8N2C7 3258 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 PRUNE2Q8WUY3 3088 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 C2CD2LO14523 706 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 TMEM191BP0C7N4 346 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 TRIM49P0CI25 452 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 TRIM49CP0CI26 452 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 TNNI1P19237 187 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 FGFR3P22607 806 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 TKTP29401 623 aaKnown RBP17.31■□□□□ 0.36
USP39-205ENST00000442708 POLR2BP30876 1174 aaKnown RBP17.31■□□□□ 0.36
USP39-205ENST00000442708 GLUD2P49448 558 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 AARSP49588 968 aaKnown RBP eCLIP17.31■□□□□ 0.36
USP39-205ENST00000442708 VAMP7P51809 220 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 LILRA4P59901 499 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 DSG1Q02413 1049 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 HYAL1Q12794 435 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 DUOXA2Q1HG44 320 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 FOXR2Q6PJQ5 311 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 RBM23Q86U06 439 aaKnown RBP17.31■□□□□ 0.36
USP39-205ENST00000442708 CSGALNACT2Q8N6G5 542 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 CACTINQ8WUQ7 758 aaKnown RBP17.31■□□□□ 0.36
USP39-205ENST00000442708 PPM1EQ8WY54 764 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 SUSD3Q96L08 255 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 NGRNQ9NPE2 291 aaKnown RBP17.31■□□□□ 0.36
USP39-205ENST00000442708 RWDD2AQ9UIY3 292 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 AGAP1Q9UPQ3 857 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 PLXNA3P51805 1871 aa17.31■□□□□ 0.36
USP39-205ENST00000442708 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.3■□□□□ 0.36
USP39-205ENST00000442708 BICDL2A1A5D9 508 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 PER2O15055 1255 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 CST3P01034 146 aaPredicted RBP17.3■□□□□ 0.36
USP39-205ENST00000442708 TNNC2P02585 160 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 SMC1AQ14683 1233 aaKnown RBP17.3■□□□□ 0.36
USP39-205ENST00000442708 USP41Q3LFD5 358 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 TDRD10Q5VZ19 366 aaKnown RBP17.3■□□□□ 0.36
USP39-205ENST00000442708 PDE12Q6L8Q7 609 aaKnown RBP17.3■□□□□ 0.36
USP39-205ENST00000442708 PRSS55Q6UWB4 352 aaPredicted RBP17.3■□□□□ 0.36
USP39-205ENST00000442708 TRAPPC11Q7Z392 1133 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 CEP57Q86XR8 500 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 MAFAQ8NHW3 353 aaPredicted RBP17.3■□□□□ 0.36
USP39-205ENST00000442708 ANKRD36BP1Q96IX9 119 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 CEP63Q96MT8 703 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 MKNK1Q9BUB5 465 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 ITGA11Q9UKX5 1188 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 NUB1Q9Y5A7 615 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.3■□□□□ 0.36
USP39-205ENST00000442708 IRAK3Q9Y616 596 aa17.3■□□□□ 0.36
USP39-205ENST00000442708 M0QZQ0 153 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 SLC16A3O15427 465 aaKnown RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 VNN1O95497 513 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 C4BPAP04003 597 aaKnown RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 RPL17P18621 184 aaKnown RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 CA8P35219 290 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 NRIP1P48552 1158 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 RBM10P98175 930 aaKnown RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 PPP3CAQ08209 521 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 BFSP1Q12934 665 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 C11orf57Q6ZUT1 292 aaPredicted RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 INTS8Q75QN2 995 aaKnown RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 FILIP1Q7Z7B0 1213 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 LNX1Q8TBB1 728 aaPredicted RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 RIN2Q8WYP3 895 aaPredicted RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 ELMO3Q96BJ8 720 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 TTPALQ9BTX7 342 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 MRPL17Q9NRX2 175 aaKnown RBP17.29■□□□□ 0.36
USP39-205ENST00000442708 STK39Q9UEW8 545 aa17.29■□□□□ 0.36
USP39-205ENST00000442708 CUL9Q8IWT3 2517 aa17.28■□□□□ 0.36
USP39-205ENST00000442708 LINC01565O15544 149 aa17.28■□□□□ 0.36
USP39-205ENST00000442708 TRAPPC3O43617 180 aa17.28■□□□□ 0.36
USP39-205ENST00000442708 URODP06132 367 aa17.28■□□□□ 0.36
USP39-205ENST00000442708 KRT19P08727 400 aa17.28■□□□□ 0.36
USP39-205ENST00000442708 CNPP09543 421 aaKnown RBP17.28■□□□□ 0.36
USP39-205ENST00000442708 EPB41P11171 864 aaKnown RBP17.28■□□□□ 0.36
USP39-205ENST00000442708 RBP5P82980 135 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms