RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ITGA4P13612 1032 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 AKT1P31749 480 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 OR1G1P47890 313 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 ADCK2Q7Z695 626 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.05■□□□□ 0.48
PTPRF-209ENST00000438120 TULP4Q9NRJ4 1543 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 PRRG1O14668 218 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 SEC24DO94855 1032 aaPredicted RBP18.05■□□□□ 0.48
PTPRF-209ENST00000438120 NUMBP49757 651 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 ATXN3P54252 364 aaPredicted RBP18.05■□□□□ 0.48
PTPRF-209ENST00000438120 GRIN1Q05586 938 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 HHIPL2Q6UWX4 724 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 TIPINQ9BVW5 301 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 CHMP2BQ9UQN3 213 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 PHF2O75151 1096 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 DEUP1Q05D60 604 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 AMHR2Q16671 573 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 MFN1Q8IWA4 741 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 KLF6Q99612 283 aaPredicted RBP18.05■□□□□ 0.48
PTPRF-209ENST00000438120 KCNH7Q9NS40 1196 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 MEFVO15553 781 aaPredicted RBP18.05■□□□□ 0.48
PTPRF-209ENST00000438120 SYTL3Q4VX76 610 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 IER5Q5VY09 327 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 NUP93Q8N1F7 819 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 PCMTD2Q9NV79 361 aa18.05■□□□□ 0.48
PTPRF-209ENST00000438120 HLA-DPA1P20036 260 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 DCAF6Q58WW2 860 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 E4F1Q66K89 784 aaPredicted RBP18.04■□□□□ 0.48
PTPRF-209ENST00000438120 FAM151AQ8WW52 585 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 NEU2Q9Y3R4 380 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 ZNF197O14709 1029 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 CYP2C9P11712 490 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 GTF2H1P32780 548 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 STAT4Q14765 748 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 PTPRN2Q92932 1015 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 BHMTQ93088 406 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 EML4Q9HC35 981 aaKnown RBP18.04■□□□□ 0.48
PTPRF-209ENST00000438120 STOML1Q9UBI4 398 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 PCDHGB4Q9UN71 923 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 GPAT2Q6NUI2 795 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 MED15Q96RN5 788 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 NPHS2Q9NP85 383 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 CLCA2Q9UQC9 943 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 CNTNAP5Q8WYK1 1306 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 NPTXRO95502 500 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 BRD2P25440 801 aaKnown RBP18.04■□□□□ 0.48
PTPRF-209ENST00000438120 HMOX2P30519 316 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 MAGEA9P43362 315 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 USP10Q14694 798 aaKnown RBP18.04■□□□□ 0.48
PTPRF-209ENST00000438120 GOLGA7BQ2TAP0 167 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 SH3TC2Q8TF17 1288 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 DEFB129Q9H1M3 183 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 NDE1Q9NXR1 346 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 CCL15-CCL14A0A0B4J2E2 113 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 ORC1Q13415 861 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 CCL15Q16663 113 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 PARK7Q99497 189 aaKnown RBP18.04■□□□□ 0.48
PTPRF-209ENST00000438120 RBM12Q9NTZ6 932 aaKnown RBP18.04■□□□□ 0.48
PTPRF-209ENST00000438120 UVRAGQ9P2Y5 699 aa18.04■□□□□ 0.48
PTPRF-209ENST00000438120 COMTP21964 271 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 FLOT2Q14254 428 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 ZKSCAN4Q969J2 545 aaPredicted RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 KLK14Q9P0G3 267 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 KIAA0391O15091 583 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 FDPSP14324 419 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 RAD23BP54727 409 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 NR1I3Q14994 352 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 DDX50Q9BQ39 737 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 KATNAL1Q9BW62 490 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 CHN1P15882 459 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 DPEP1P16444 411 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 KCNA4P22459 653 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 CCZ1BP86790 482 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 CCZ1P86791 482 aaPredicted RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 PGBD3Q8N328 593 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 TARS2Q9BW92 718 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 CELF4Q9BZC1 486 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 IL25Q9H293 177 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 NEUROG2Q9H2A3 272 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 ARHGEF38Q9NXL2 777 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 STX18Q9P2W9 335 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 C2CD2LO14523 706 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 ARHGEF26Q96DR7 871 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 YIPF2Q9BWQ6 316 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 NT5C1AQ9BXI3 368 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 MRPL40Q9NQ50 206 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 METTL5Q9NRN9 209 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 SENP1Q9P0U3 644 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 WDR3Q9UNX4 943 aaKnown RBP eCLIP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 TBX3O15119 743 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 RAD9BQ6WBX8 426 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 TEX12Q9BXU0 123 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 LATS2Q9NRM7 1088 aa18.03■□□□□ 0.48
PTPRF-209ENST00000438120 LSM7Q9UK45 103 aaKnown RBP18.03■□□□□ 0.48
PTPRF-209ENST00000438120 TRPM1Q7Z4N2 1603 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 ALDH1A1P00352 501 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 KCNJ1P48048 391 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 TWF1Q12792 350 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 RRM2BQ7LG56 351 aa18.02■□□□□ 0.48
PTPRF-209ENST00000438120 TMA16Q96EY4 203 aaKnown RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms