RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 LIG3P49916 1009 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 TDRD10Q5VZ19 366 aaKnown RBP10.12□□□□□ -0.79
CUX1-206ENST00000437600 ANKRD23Q86SG2 305 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 IFNL1Q8IU54 200 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 DEPTORQ8TB45 409 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 ZSWIM1Q9BR11 485 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 CCDC113Q9H0I3 377 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 CARD9Q9H257 536 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 AZI2Q9H6S1 392 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 APOBEC3GQ9HC16 384 aaKnown RBP10.12□□□□□ -0.79
CUX1-206ENST00000437600 TMEM8AQ9HCN3 771 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 CHST7Q9NS84 486 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 EXOC7Q9UPT5 735 aa10.12□□□□□ -0.79
CUX1-206ENST00000437600 PI4K2BG5E9Z4 385 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 STAM2O75886 525 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 HLA-DRAP01903 254 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 IVLP07476 585 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 TNFRSF8P28908 595 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 ICAM3P32942 547 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 PTENP60484 403 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 IFI35P80217 286 aaPredicted RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 CDR2Q01850 454 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 METTL7BQ6UX53 244 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 RHOT2Q8IXI1 618 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 TAB3Q8N5C8 712 aaPredicted RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 PRPF31Q8WWY3 499 aaKnown RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 SEPT1Q8WYJ6 367 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 CALR3Q96L12 384 aaKnown RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 NTPCRQ9BSD7 190 aaKnown RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 ARHGAP39Q9C0H5 1083 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 TMBIM4Q9HC24 238 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 AGO2Q9UKV8 859 aaKnown RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 ATP2C2O75185 946 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 MAPK4P31152 587 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 CAP1Q01518 475 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 CUL1Q13616 776 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 NEDD9Q14511 834 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 KAZNQ674X7 775 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 CRELD2Q6UXH1 353 aaPredicted RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 ANKS1BQ7Z6G8 1248 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 CCDC50Q8IVM0 306 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 UBL4BQ8N7F7 174 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 RNF25Q96BH1 459 aaPredicted RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 MFSD14AQ96MC6 490 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 NLRP4Q96MN2 994 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 PARK7Q99497 189 aaKnown RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 DHX33Q9H6R0 707 aaKnown RBP10.11□□□□□ -0.79
CUX1-206ENST00000437600 NCANO14594 1321 aa10.11□□□□□ -0.79
CUX1-206ENST00000437600 KIAA0391O15091 583 aaKnown RBP10.1□□□□□ -0.79
CUX1-206ENST00000437600 VNN1O95497 513 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 WEE2P0C1S8 567 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 PIK3CAP42336 1068 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 CLCN3P51790 818 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 DUPD1Q68J44 220 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 ARMCX2Q7L311 632 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 MSTO1Q9BUK6 570 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 MLXIPLQ9NP71 852 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 RNF19AQ9NV58 838 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 ARHGAP28Q9P2N2 729 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 R3HDM2Q9Y2K5 976 aaKnown RBP10.1□□□□□ -0.79
CUX1-206ENST00000437600 NUB1Q9Y5A7 615 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 PCDHB4Q9Y5E5 795 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 GOLGA6L10A0A0M3HER8 536 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 EBAG9O00559 213 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 DKC1O60832 514 aaKnown RBP eCLIP10.1□□□□□ -0.791e-7■■■■■ 34.5
CUX1-206ENST00000437600 SHOX2O60902 331 aaPredicted RBP10.1□□□□□ -0.79
CUX1-206ENST00000437600 ATG7O95352 703 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 SLC25A27O95847 323 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 ZNF286BP0CG31 522 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 CTGFP29279 349 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 ADCYAP1R1P41586 468 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 MAGEA9P43362 315 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 GPC3P51654 580 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 RPL7AP62424 266 aaKnown RBP10.1□□□□□ -0.79
CUX1-206ENST00000437600 ADCY2Q08462 1091 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 STRN3Q13033 797 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 ALCAMQ13740 583 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 CAPSQ13938 189 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 BRDTQ58F21 947 aaPredicted RBP10.1□□□□□ -0.79
CUX1-206ENST00000437600 SCARA5Q6ZMJ2 495 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 GPR142Q7Z601 462 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 RHPN2Q8IUC4 686 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 THNSL1Q8IYQ7 743 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 RNF149Q8NC42 400 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 SPIRE2Q8WWL2 714 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 MYCBPQ99417 103 aaPredicted RBP10.1□□□□□ -0.79
CUX1-206ENST00000437600 GPR20Q99678 358 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 RNPEPQ9H4A4 650 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 RBAKQ9NYW8 714 aaPredicted RBP10.1□□□□□ -0.79
CUX1-206ENST00000437600 EVPLQ92817 2033 aa10.1□□□□□ -0.79
CUX1-206ENST00000437600 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.09□□□□□ -0.79
CUX1-206ENST00000437600 CES2O00748 559 aa10.09□□□□□ -0.79
CUX1-206ENST00000437600 ACSL3O95573 720 aa10.09□□□□□ -0.79
CUX1-206ENST00000437600 KRT10P13645 584 aa10.09□□□□□ -0.79
CUX1-206ENST00000437600 MYBPC2Q14324 1141 aa10.09□□□□□ -0.79
CUX1-206ENST00000437600 ACAD10Q6JQN1 1059 aa10.09□□□□□ -0.79
CUX1-206ENST00000437600 ZDHHC24Q6UX98 284 aa10.09□□□□□ -0.79
CUX1-206ENST00000437600 C12orf56Q8IXR9 622 aa10.09□□□□□ -0.79
CUX1-206ENST00000437600 LRRC45Q96CN5 670 aa10.09□□□□□ -0.79
CUX1-206ENST00000437600 CAPNS2Q96L46 248 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms