RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 ADAM22Q9P0K1 906 aa8.93□□□□□ -0.98
CD44-208ENST00000428726 MAGED2Q9UNF1 606 aaPredicted RBP8.93□□□□□ -0.98
CD44-208ENST00000428726 A0A087WZ62 844 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 TMEM253P0C7T8 217 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 RFX1P22670 979 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 CHKAP35790 457 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 MAGEA9P43362 315 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 NSFP46459 744 aaKnown RBP8.92□□□□□ -0.98
CD44-208ENST00000428726 GCLCP48506 637 aaPredicted RBP8.92□□□□□ -0.98
CD44-208ENST00000428726 GAD2Q05329 585 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 IFT88Q13099 833 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 GPR162Q16538 588 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 KIZQ2M2Z5 673 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 XKR3Q5GH77 459 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 EFCAB12Q6NXP0 572 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 SYCE1Q8N0S2 351 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 SLC16A10Q8TF71 515 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 SCFD2Q8WU76 684 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 TMEM174Q8WUU8 243 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 HES6Q96HZ4 224 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 MCEEQ96PE7 176 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 LBHD1Q9BQE6 289 aaPredicted RBP8.92□□□□□ -0.98
CD44-208ENST00000428726 FDXACB1Q9BRP7 624 aaPredicted RBP8.92□□□□□ -0.98
CD44-208ENST00000428726 TIPINQ9BVW5 301 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 RBPJLQ9UBG7 517 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 LOC102724159A0A0B4J2E5 919 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 SPATA31C2B4DYI2 1134 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 LAMTOR4Q0VGL1 99 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 PWP2Q15269 919 aaKnown RBP8.92□□□□□ -0.98
CD44-208ENST00000428726 ZNF568Q3ZCX4 644 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 SGO2Q562F6 1265 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 C12orf56Q8IXR9 622 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 FAM71AQ8IYT1 594 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 RBBP8NLQ8NC74 664 aaPredicted RBP8.92□□□□□ -0.98
CD44-208ENST00000428726 AFG1LQ8WV93 481 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 TFAP2BQ92481 460 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 CAVIN3Q969G5 261 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 VTI1AQ96AJ9 217 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 ZSWIM1Q9BR11 485 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 C12orf65Q9H3J6 166 aaKnown RBP8.92□□□□□ -0.98
CD44-208ENST00000428726 TMEM8AQ9HCN3 771 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 GDF3Q9NR23 364 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 SUCLA2Q9P2R7 463 aaPredicted RBP8.92□□□□□ -0.98
CD44-208ENST00000428726 EXOC7Q9UPT5 735 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 STXBP5LQ9Y2K9 1186 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 DNAH14Q0VDD8 3507 aa8.92□□□□□ -0.98
CD44-208ENST00000428726 MYPNQ86TC9 1320 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 TLR3O15455 904 aaKnown RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 FDX1P10109 184 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 SFNP31947 248 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 CORO7P57737 925 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 ZNF200P98182 395 aaPredicted RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 KCTD2Q14681 263 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 KYNUQ16719 465 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 DCUN1D2Q6PH85 259 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 KIRREL3Q8IZU9 778 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 C7orf31Q8N865 590 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 GDAP1Q8TB36 358 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 NDRG1Q92597 394 aaKnown RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 FMO2Q99518 471 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 FAM49BQ9NUQ9 324 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 PIH1D1Q9NWS0 290 aaKnown RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 EVPLQ92817 2033 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 RTN2O75298 545 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 F7P08709 466 aaPredicted RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 NR1D1P20393 614 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 GJA5P36382 358 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 SNRPFP62306 86 aaKnown RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 ATP11AP98196 1134 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 TRPC3Q13507 836 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 ZKSCAN8Q15776 578 aaPredicted RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 SEL1L2Q5TEA6 688 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 SLFN11Q7Z7L1 901 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 TADA2BQ86TJ2 420 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 SLC17A8Q8NDX2 589 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 ACTRT1Q8TDG2 376 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 IWS1Q96ST2 819 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 ST6GALNAC4Q9H4F1 302 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 SYNCQ9H7C4 482 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 GPATCH2LQ9NWQ4 482 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 GOLGA6L10A6NI86 522 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 P4HA2O15460 535 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 NFICP08651 508 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 ADCY8P40145 1251 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 CDR2Q01850 454 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 ACTN3Q08043 901 aaPredicted RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 ZNF844Q08AG5 666 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 KIF22Q14807 665 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 ALS2CLQ60I27 953 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 GPAT2Q6NUI2 795 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 LBX2Q6XYB7 198 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 CTU1Q7Z7A3 348 aaKnown RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 APOBEC3FQ8IUX4 373 aaKnown RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 SHC3Q92529 594 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 KIFAP3Q92845 792 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 PIWIL1Q96J94 861 aaKnown RBP8.91□□□□□ -0.98
CD44-208ENST00000428726 TWNKQ96RR1 684 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 SYT11Q9BT88 431 aa8.91□□□□□ -0.98
CD44-208ENST00000428726 GOLGA2P5Q9HBQ8 144 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms