RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 TNNC1P63316 161 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 KCNMA1Q12791 1236 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 RAPGEF1Q13905 1077 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 TRIM14Q14142 442 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 BTG3Q14201 252 aaPredicted RBP8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 SGSM1Q2NKQ1 1148 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 ZNF667Q5HYK9 610 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 SPOUT1Q5T280 376 aaKnown RBP8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 C9orf57Q5W0N0 161 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 SPOPLQ6IQ16 392 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 SCARA5Q6ZMJ2 495 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 CACNA2D4Q7Z3S7 1137 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 CRIPAKQ8N1N5 446 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 PPM1KQ8N3J5 372 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 LRRC52Q8N7C0 313 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 EHBP1Q8NDI1 1231 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 RABGGTAQ92696 567 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 TAF4BQ92750 862 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 TOP1MTQ969P6 601 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 ELMO3Q96BJ8 720 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 DDX27Q96GQ7 796 aaKnown RBP8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 UROC1Q96N76 676 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 CASD1Q96PB1 797 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 UBE2OQ9C0C9 1292 aaKnown RBP8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 NIF3L1Q9GZT8 377 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 HCSTQ9UBK5 93 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 NXF1Q9UBU9 619 aaKnown RBP8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 APEX2Q9UBZ4 518 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 PRG3Q9Y2Y8 225 aaPredicted RBP8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 COQ4Q9Y3A0 265 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 NUB1Q9Y5A7 615 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 SCN5AQ14524 2016 aa8.51□□□□□ -1.05
HMGA1P4-201ENST00000428643 EPHB6O15197 1021 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 B4GALT3O60512 393 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 LRRN2O75325 713 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 B3GAT3O94766 335 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 GJB5O95377 273 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 CST3P01034 146 aaPredicted RBP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 PTMAP06454 111 aaKnown RBP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 P4HA1P13674 534 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 UCHL3P15374 230 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 RFX1P22670 979 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 LRPAP1P30533 357 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 ATICP31939 592 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 RPL9P32969 192 aaKnown RBP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 PBX1P40424 430 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 OR1G1P47890 313 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 TAF6P49848 677 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 CLCNKBP51801 687 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 POLR2FP61218 127 aaKnown RBP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 DSC1Q08554 894 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 NAB2Q15742 525 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 WDR72Q3MJ13 1102 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 SV2CQ496J9 727 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 C9orf50Q5SZB4 431 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 KLHDC7AQ5VTJ3 777 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 PRPF38BQ5VTL8 546 aaKnown RBP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 SCARA3Q6AZY7 606 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 IQCEQ6IPM2 695 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 GJB7Q6PEY0 223 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 RRAGAQ7L523 313 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 ZNF280BQ86YH2 543 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 HERC6Q8IVU3 1022 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 ARHGEF19Q8IW93 802 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 COLGALT2Q8IYK4 626 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 CMTR2Q8IYT2 770 aaKnown RBP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 LMO3Q8TAP4 145 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 HASPINQ8TF76 798 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 SPAG5Q96R06 1193 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 MMS19Q96T76 1030 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 NUP58Q9BVL2 599 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 XYLT2Q9H1B5 865 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 GANQ9H2C0 597 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 APOBEC3GQ9HC16 384 aaKnown RBP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 SIX2Q9NPC8 291 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 UBE2TQ9NPD8 197 aaPredicted RBP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 NLRC4Q9NPP4 1024 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 PLCB1Q9NQ66 1216 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 CEP72Q9P209 647 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 DNAJB4Q9UDY4 337 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 POLIQ9UNA4 740 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 FHOD1Q9Y613 1164 aa8.5□□□□□ -1.05
HMGA1P4-201ENST00000428643 RALGAPA2Q2PPJ7 1873 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 ANO9A1A5B4 782 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 PIRO00625 290 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 TLL1O43897 1013 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 DDHD2O94830 711 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 KIF4AO95239 1232 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 GYPCP04921 128 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 KRT5P13647 590 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 CD58P19256 250 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 TBXAS1P24557 533 aaPredicted RBP8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 PBX3P40426 434 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 USP8P40818 1118 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 SLC11A1P49279 550 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 MFAP3P55082 362 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 CUL2Q13617 745 aa8.49□□□□□ -1.05
HMGA1P4-201ENST00000428643 SHHQ15465 462 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms