RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 FAM156AQ8NDB6 213 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 IL17DQ8TAD2 202 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 CPT1CQ8TCG5 803 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 EXTL1Q92935 676 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 NEU1Q99519 415 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 BRD9Q9H8M2 597 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 ZMAT3Q9HA38 289 aaKnown RBP5.23□□□□□ -1.57
USP40-204ENST00000427947 SARS2Q9NP81 518 aaKnown RBP5.23□□□□□ -1.57
USP40-204ENST00000427947 AURKAIP1Q9NWT8 199 aaPredicted RBP5.23□□□□□ -1.57
USP40-204ENST00000427947 TRPM5Q9NZQ8 1165 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 CPA4Q9UI42 421 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 SLC45A2Q9UMX9 530 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 PCDHA6Q9UN73 950 aa5.23□□□□□ -1.57
USP40-204ENST00000427947 BTBD11A6QL63 1104 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 ZNF785A8K8V0 405 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 TRIM24O15164 1050 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 ZNF185O15231 689 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 FAM20BO75063 409 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 MATN4O95460 622 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 ZBED1O96006 694 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 GJB1P08034 283 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 PSMC1P62191 440 aaKnown RBP5.22□□□□□ -1.57
USP40-204ENST00000427947 EXOSC9Q06265 439 aaKnown RBP5.22□□□□□ -1.57
USP40-204ENST00000427947 TOB2Q14106 344 aaPredicted RBP5.22□□□□□ -1.57
USP40-204ENST00000427947 GALEQ14376 348 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 CNN3Q15417 329 aaKnown RBP5.22□□□□□ -1.57
USP40-204ENST00000427947 NRN1LQ496H8 165 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 RABL3Q5HYI8 236 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 KHDC1LQ5JSQ8 128 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 AGAP9Q5VTM2 703 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 TSHZ3Q63HK5 1081 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 METRNLQ641Q3 311 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 SWSAP1Q6NVH7 229 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 MAEAQ7L5Y9 396 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 CHST15Q7LFX5 561 aaPredicted RBP5.22□□□□□ -1.57
USP40-204ENST00000427947 GDF7Q7Z4P5 450 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 ZFPM1Q8IX07 1006 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 CCAR1Q8IX12 1150 aaKnown RBP5.22□□□□□ -1.57
USP40-204ENST00000427947 RHOT2Q8IXI1 618 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 OR56A1Q8NGH5 318 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 DCLRE1CQ96SD1 692 aaKnown RBP5.22□□□□□ -1.57
USP40-204ENST00000427947 CNNM1Q9NRU3 951 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 CFAP97Q9P2B7 532 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 ATP11BQ9Y2G3 1177 aa5.22□□□□□ -1.57
USP40-204ENST00000427947 A0A1W2PPL8 197 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 GRXCR1A8MXD5 290 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 AHRRA9YTQ3 701 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 DIRC3C9JPN6 131 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 RPS6KA4O75676 772 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 CKBP12277 381 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 RHCEP18577 417 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 GCSHP23434 173 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 CACNB3P54284 484 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 NOMO3P69849 1222 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 GPSM2P81274 684 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 RHDQ02161 417 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 KIAA0753Q2KHM9 967 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 PDCD4Q53EL6 469 aaKnown RBP5.21□□□□□ -1.58
USP40-204ENST00000427947 NOMO2Q5JPE7 1267 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 PCSK9Q8NBP7 692 aaKnown RBP5.21□□□□□ -1.58
USP40-204ENST00000427947 TMIEQ8NEW7 156 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 NUP133Q8WUM0 1156 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 TTC17Q96AE7 1141 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 TEX101Q9BY14 249 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 IMPG2Q9BZV3 1241 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 RLIMQ9NVW2 624 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 PARPBPQ9NWS1 579 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 ZDHHC8Q9ULC8 765 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 L1RE1Q9UN81 338 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 CHST2Q9Y4C5 530 aa5.21□□□□□ -1.58
USP40-204ENST00000427947 AATKQ6ZMQ8 1374 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 CFAP69A5D8W1 941 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 B8ZZF3 427 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 PHGDHO43175 533 aaKnown RBP5.2□□□□□ -1.58
USP40-204ENST00000427947 CAND2O75155 1236 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 GNAI2P04899 355 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 KRT18P05783 430 aaKnown RBP5.2□□□□□ -1.58
USP40-204ENST00000427947 SPATA31D3P0C874 917 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 RARBP10826 455 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 FCER1AP12319 257 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 HDCP19113 662 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 KCNJ5P48544 419 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 ZNF135P52742 658 aaPredicted RBP5.2□□□□□ -1.58
USP40-204ENST00000427947 SOX8P57073 446 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 SLFN5Q08AF3 891 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 KIF22Q14807 665 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 RNF220Q5VTB9 566 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 DARS2Q6PI48 645 aaKnown RBP5.2□□□□□ -1.58
USP40-204ENST00000427947 KSR2Q6VAB6 950 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 RNF207Q6ZRF8 634 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 SPATA31D4Q6ZUB0 917 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 PDSS2Q86YH6 399 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 SLC17A8Q8NDX2 589 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 SH3RF3Q8TEJ3 882 aaPredicted RBP5.2□□□□□ -1.58
USP40-204ENST00000427947 MARS2Q96GW9 593 aaKnown RBP5.2□□□□□ -1.58
USP40-204ENST00000427947 KLHL32Q96NJ5 620 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 PLEKHG4BQ96PX9 1271 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 ZSWIM1Q9BR11 485 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 TLR10Q9BXR5 811 aa5.2□□□□□ -1.58
USP40-204ENST00000427947 C22orf23Q9BZE7 217 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms