RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 C1orf220Q5T0J3 134 aa26.45■■□□□ 1.82
VEGFA-209ENST00000425836 TCF25Q9BQ70 676 aa26.45■■□□□ 1.82
VEGFA-209ENST00000425836 SRRTQ9BXP5 876 aaKnown RBP26.45■■□□□ 1.82
VEGFA-209ENST00000425836 ZBP1Q9H171 429 aa26.45■■□□□ 1.82
VEGFA-209ENST00000425836 ANO10Q9NW15 660 aa26.45■■□□□ 1.82
VEGFA-209ENST00000425836 NUB1Q9Y5A7 615 aa26.45■■□□□ 1.82
VEGFA-209ENST00000425836 PCDHGC5Q9Y5F6 944 aa26.45■■□□□ 1.82
VEGFA-209ENST00000425836 ENPEPQ07075 957 aa26.44■■□□□ 1.82
VEGFA-209ENST00000425836 BFSP1Q12934 665 aa26.44■■□□□ 1.82
VEGFA-209ENST00000425836 STX1AQ16623 288 aa26.44■■□□□ 1.82
VEGFA-209ENST00000425836 TMC7Q7Z402 723 aa26.44■■□□□ 1.82
VEGFA-209ENST00000425836 MICAL1Q8TDZ2 1067 aa26.44■■□□□ 1.82
VEGFA-209ENST00000425836 HERC2P3Q9BVR0 1158 aa26.44■■□□□ 1.82
VEGFA-209ENST00000425836 SIX4Q9UIU6 781 aa26.44■■□□□ 1.82
VEGFA-209ENST00000425836 ITGA11Q9UKX5 1188 aa26.44■■□□□ 1.82
VEGFA-209ENST00000425836 ITGB3P05106 788 aa26.43■■□□□ 1.82
VEGFA-209ENST00000425836 FOSL2P15408 326 aa26.43■■□□□ 1.82
VEGFA-209ENST00000425836 POLR2BP30876 1174 aaKnown RBP26.43■■□□□ 1.82
VEGFA-209ENST00000425836 TYRO3Q06418 890 aa26.43■■□□□ 1.82
VEGFA-209ENST00000425836 ELAVL2Q12926 359 aaKnown RBP26.43■■□□□ 1.82
VEGFA-209ENST00000425836 TRAPPC11Q7Z392 1133 aa26.43■■□□□ 1.82
VEGFA-209ENST00000425836 USP37Q86T82 979 aa26.43■■□□□ 1.82
VEGFA-209ENST00000425836 ENTPD7Q9NQZ7 604 aa26.43■■□□□ 1.82
VEGFA-209ENST00000425836 AGAP1Q9UPQ3 857 aa26.43■■□□□ 1.82
VEGFA-209ENST00000425836 I3L4J1 428 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 IKBKBO14920 756 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 TRAPPC3O43617 180 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 LETM1O95202 739 aaPredicted RBP26.42■■□□□ 1.82
VEGFA-209ENST00000425836 CTSAP10619 480 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 AP3M2P53677 418 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 LILRA4P59901 499 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 TIGD5Q53EQ6 642 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 FAM171A1Q5VUB5 890 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 PDE12Q6L8Q7 609 aaKnown RBP26.42■■□□□ 1.82
VEGFA-209ENST00000425836 B3GALT6Q96L58 329 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 NGRNQ9NPE2 291 aaKnown RBP26.42■■□□□ 1.82
VEGFA-209ENST00000425836 CHST7Q9NS84 486 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 ANK1P16157 1881 aa26.42■■□□□ 1.82
VEGFA-209ENST00000425836 COL4A4P53420 1690 aaPredicted RBP26.42■■□□□ 1.82
VEGFA-209ENST00000425836 SPTLC1O15269 473 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 C4BPAP04003 597 aaKnown RBP26.41■■□□□ 1.82
VEGFA-209ENST00000425836 TRIM49P0CI25 452 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 TRIM49CP0CI26 452 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 AARSP49588 968 aaKnown RBP eCLIP26.41■■□□□ 1.821e-6■■■■□ 20.6
VEGFA-209ENST00000425836 RBP5P82980 135 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 USP41Q3LFD5 358 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 PLPP4Q5VZY2 271 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 C11orf57Q6ZUT1 292 aaPredicted RBP26.41■■□□□ 1.82
VEGFA-209ENST00000425836 AUTS2Q8WXX7 1259 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 CXCL14O95715 111 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 KRT19P08727 400 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 KIAA0319Q5VV43 1072 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 FRMD5Q7Z6J6 570 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 MRPL43Q8N983 215 aaKnown RBP26.41■■□□□ 1.82
VEGFA-209ENST00000425836 SUSD3Q96L08 255 aa26.41■■□□□ 1.82
VEGFA-209ENST00000425836 ARMCX3Q9UH62 379 aaPredicted RBP26.41■■□□□ 1.82
VEGFA-209ENST00000425836 PDCD11Q14690 1871 aaKnown RBP26.41■■□□□ 1.82
VEGFA-209ENST00000425836 HIDE1A8MVS5 230 aa26.4■■□□□ 1.82
VEGFA-209ENST00000425836 FGFR1OPO95684 399 aaKnown RBP26.4■■□□□ 1.82
VEGFA-209ENST00000425836 CST3P01034 146 aaPredicted RBP26.4■■□□□ 1.82
VEGFA-209ENST00000425836 FGFR3P22607 806 aa26.4■■□□□ 1.82
VEGFA-209ENST00000425836 DSG1Q02413 1049 aa26.4■■□□□ 1.82
VEGFA-209ENST00000425836 PPP3CAQ08209 521 aa26.4■■□□□ 1.82
VEGFA-209ENST00000425836 SMC1AQ14683 1233 aaKnown RBP26.4■■□□□ 1.82
VEGFA-209ENST00000425836 BMS1Q14692 1282 aaKnown RBP26.4■■□□□ 1.82
VEGFA-209ENST00000425836 TDRD10Q5VZ19 366 aaKnown RBP26.4■■□□□ 1.82
VEGFA-209ENST00000425836 LRRC52Q8N7C0 313 aa26.4■■□□□ 1.82
VEGFA-209ENST00000425836 TTPALQ9BTX7 342 aa26.4■■□□□ 1.82
VEGFA-209ENST00000425836 METTL14Q9HCE5 456 aaKnown RBP26.4■■□□□ 1.82
VEGFA-209ENST00000425836 SYCE3A1L190 88 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 LILRB3O75022 631 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 GNA14O95837 355 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 PAX3P23760 479 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 PNPLA4P41247 253 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 GLUD2P49448 558 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 TAF6P49848 677 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 PTPN14Q15678 1187 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 CCDC40Q4G0X9 1142 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 RTP2Q5QGT7 225 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 KIAA1841Q6NSI8 718 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 PDZRN4Q6ZMN7 1036 aaPredicted RBP26.39■■□□□ 1.82
VEGFA-209ENST00000425836 SV2AQ7L0J3 742 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 CEP57Q86XR8 500 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 ZNF560Q96MR9 790 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 DNAJC25Q9H1X3 360 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 NSUN3Q9H649 340 aaKnown RBP26.39■■□□□ 1.82
VEGFA-209ENST00000425836 IRAK3Q9Y616 596 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 PLXNA4Q9HCM2 1894 aa26.39■■□□□ 1.82
VEGFA-209ENST00000425836 C2orf71A6NGG8 1288 aa26.38■■□□□ 1.81
VEGFA-209ENST00000425836 M0QZQ0 153 aa26.38■■□□□ 1.81
VEGFA-209ENST00000425836 C2CD2LO14523 706 aa26.38■■□□□ 1.81
VEGFA-209ENST00000425836 URODP06132 367 aa26.38■■□□□ 1.81
VEGFA-209ENST00000425836 TKTP29401 623 aaKnown RBP26.38■■□□□ 1.81
VEGFA-209ENST00000425836 GCLMP48507 274 aa26.38■■□□□ 1.81
VEGFA-209ENST00000425836 ZACNQ401N2 412 aa26.38■■□□□ 1.81
VEGFA-209ENST00000425836 C15orf39Q6ZRI6 1047 aa26.38■■□□□ 1.81
VEGFA-209ENST00000425836 FUCA2Q9BTY2 467 aa26.38■■□□□ 1.81
VEGFA-209ENST00000425836 MRPL17Q9NRX2 175 aaKnown RBP26.38■■□□□ 1.81
VEGFA-209ENST00000425836 PHACTR2O75167 634 aa26.37■■□□□ 1.81
VEGFA-209ENST00000425836 BIRC3Q13489 604 aa26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms