RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 OR1G1P47890 313 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 POLE2P56282 527 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CACNB2Q08289 660 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CEP78Q5JTW2 689 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 NOTUMQ6P988 496 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SMYD4Q8IYR2 804 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 C18orf8Q96DM3 657 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 NUDT12Q9BQG2 462 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 C17orf80Q9BSJ5 609 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ADNPQ9H2P0 1102 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ZSWIM5Q9P217 1185 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 LNPEPQ9UIQ6 1025 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CCDC195A0A1B0GUA6 201 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 GRID2IPA4D2P6 1211 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 IGSF3O75054 1194 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 DAB1O75553 588 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SLC11A2P49281 568 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 HDLBPQ00341 1268 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 LLGL1Q15334 1064 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 LCORLQ8N3X6 602 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SCFD2Q8WU76 684 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 DPF3Q92784 378 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 YME1L1Q96TA2 773 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ZC3H7BQ9UGR2 993 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 TMEM94Q12767 1356 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 C2orf81A6NN90 581 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SFI1A8K8P3 1242 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF500O60304 480 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CYTH1Q15438 398 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 C16orf89Q6UX73 402 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 RCOR2Q8IZ40 523 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CLEC4FQ8N1N0 589 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PAGE5Q96GU1 130 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 AHCYL2Q96HN2 611 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CAMKK2Q96RR4 588 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 RIC8BQ9NVN3 520 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 AURKCQ9UQB9 309 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 GCLMP48507 274 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 STAT5BP51692 787 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 DEFA1P59665 94 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 DEFA3P59666 94 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 KIZQ2M2Z5 673 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 C11orf96Q7Z7L8 435 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CINPQ9BW66 212 aaPredicted RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SENP2Q9HC62 589 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 SCN3BQ9NY72 215 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 TUBGCP4Q9UGJ1 667 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 FBXL21Q9UKT6 434 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 BAZ2BQ9UIF8 2168 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 TTLL13PA6NNM8 815 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 WBP4O75554 376 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PNPLA4P41247 253 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PMS1P54277 932 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 EIF3EP60228 445 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 ADCK5Q3MIX3 580 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 MOSPD2Q8NHP6 518 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 CARD14Q9BXL6 1004 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 NOP53Q9NZM5 478 aaKnown RBP7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PCSK1NQ9UHG2 260 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 PCDHB12Q9Y5F1 795 aa7.19□□□□□ -1.26
SCN1A-204ENST00000423058 MAP2P11137 1827 aaKnown RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 MAPKBP1O60336 1514 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 HEATR9A2RTY3 570 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 RPS6KA4O75676 772 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 PALMO75781 387 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 FKBP9O95302 570 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 CHGBP05060 677 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 CUL4AQ13619 759 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 C11orf88Q6PI97 169 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 FKBP9P1Q75LS8 142 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ATP6V0D2Q8N8Y2 350 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 RAD54LQ92698 747 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 MFSD1Q9H3U5 465 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 PPCSQ9HAB8 311 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 CDK12Q9NYV4 1490 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SHROOM1Q2M3G4 852 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ZCCHC8Q6NZY4 707 aaKnown RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 RSPH1Q8WYR4 309 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ELMO2Q96JJ3 720 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 GLT1D1Q96MS3 346 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 TSC22D3Q99576 134 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ZBTB1Q9Y2K1 713 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ATP9BO43861 1147 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 MYL2P10916 166 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SLC16A1P53985 500 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 GUCY1A3Q02108 690 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 HERC6Q8IVU3 1022 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 DYNLL2Q96FJ2 89 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SEC31BQ9NQW1 1179 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 MTMR6Q9Y217 621 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 MROH7-TTC4A0A0A0MT08 1334 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 MYO1GB0I1T2 1018 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 SMIM22K7EJ46 135 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ZBTB7AO95365 584 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 RRM2P31350 389 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 CHI3L1P36222 383 aaPredicted RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 IYDQ6PHW0 289 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ITIH5Q86UX2 942 aa7.18□□□□□ -1.26
SCN1A-204ENST00000423058 ZNF579Q8NAF0 562 aaKnown RBP7.18□□□□□ -1.26
SCN1A-204ENST00000423058 RNF149Q8NC42 400 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms