RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 ZNF622Q969S3 477 aaKnown RBP eCLIP11.7□□□□□ -0.54
LIMS1-207ENST00000422797 NGLY1Q96IV0 654 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 LRRC37BQ96QE4 947 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 SMC6Q96SB8 1091 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 RNPEPL1Q9HAU8 725 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ETNK1Q9HBU6 452 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 CHST7Q9NS84 486 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 ADAM22Q9P0K1 906 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 TBX20Q9UMR3 447 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 SHOC2Q9UQ13 582 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 MYH11P35749 1972 aa11.7□□□□□ -0.54
LIMS1-207ENST00000422797 DNALI1O14645 258 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-207ENST00000422797 PPP1R12AO14974 1030 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ZBTB39O15060 712 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 GRIN3BO60391 1043 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 DIAPH2O60879 1101 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ZWINTO95229 277 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ADRB2P07550 413 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 RPSAP08865 295 aaKnown RBP11.69□□□□□ -0.54
LIMS1-207ENST00000422797 PSMC5P62195 406 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 PPARDQ03181 441 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 CYP24A1Q07973 514 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 DMP1Q13316 513 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-207ENST00000422797 SNX1Q13596 522 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 BLMHQ13867 455 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 TSNAXIP1Q2TAA8 658 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 EAPPQ56P03 285 aaPredicted RBP11.69□□□□□ -0.54
LIMS1-207ENST00000422797 SLC45A4Q5BKX6 768 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 WDR44Q5JSH3 913 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ANKRD20A2Q5SQ80 823 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 DACT2Q5SW24 774 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ANKRD20A1Q5TYW2 823 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ANKRD20A3Q5VUR7 823 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 PCNX4Q63HM2 1172 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 PCGF5Q86SE9 256 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ECHDC2Q86YB7 292 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 LMNTD2Q8IXW0 634 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 RCOR2Q8IZ40 523 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 OGFOD1Q8N543 542 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ENDOVQ8N8Q3 282 aaKnown RBP11.69□□□□□ -0.54
LIMS1-207ENST00000422797 GDAP1Q8TB36 358 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 PLEKHO2Q8TD55 490 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 LRRC8CQ8TDW0 803 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 KAT5Q92993 513 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 ALKBH8Q96BT7 664 aaKnown RBP11.69□□□□□ -0.54
LIMS1-207ENST00000422797 OSBPL8Q9BZF1 889 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 DRG1Q9Y295 367 aaKnown RBP11.69□□□□□ -0.54
LIMS1-207ENST00000422797 UBIAD1Q9Y5Z9 338 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 SLX4Q8IY92 1834 aa11.69□□□□□ -0.54
LIMS1-207ENST00000422797 MROH7Q68CQ1 1323 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 EDF1O60869 148 aaKnown RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 CYP1A1P04798 512 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 TROVE2P10155 538 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 CALB2P22676 271 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 KLRC2P26717 231 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 YWHABP31946 246 aaKnown RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 PHBP35232 272 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 MRPS35P82673 323 aaKnown RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 KRT76Q01546 638 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 MOGSQ13724 837 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 TMED2Q15363 201 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 UBAP2Q5T6F2 1119 aaKnown RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 XRRA1Q6P2D8 792 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 GPD1LQ8N335 351 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 DENND1AQ8TEH3 1009 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 SEMA4DQ92854 862 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 KCNN1Q92952 543 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 THOC1Q96FV9 657 aaKnown RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 MASTLQ96GX5 879 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 FAXDC2Q96IV6 333 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 BTBD6Q96KE9 485 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 RMDN2Q96LZ7 410 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 RBM15Q96T37 977 aaKnown RBP eCLIP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 NTPCRQ9BSD7 190 aaKnown RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 TRABDQ9H4I3 376 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 AGO4Q9HCK5 861 aaKnown RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 CYP39A1Q9NYL5 469 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 PSMC3IPQ9P2W1 217 aaPredicted RBP11.68□□□□□ -0.54
LIMS1-207ENST00000422797 IP6K2Q9UHH9 426 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 LNPEPQ9UIQ6 1025 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 PHTF1Q9UMS5 762 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 STK38LQ9Y2H1 464 aa11.68□□□□□ -0.54
LIMS1-207ENST00000422797 FAM196BA6NMK8 535 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 WDR64B1ANS9 1081 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 SMNDC1O75940 238 aaKnown RBP eCLIP11.67□□□□□ -0.54
LIMS1-207ENST00000422797 TJP3O95049 919 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 ICAM1P05362 532 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 RALAP11233 206 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 KRT5P13647 590 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 TAP1Q03518 808 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 MPP2Q14168 576 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 TAF11Q15544 211 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 BRDTQ58F21 947 aaPredicted RBP11.67□□□□□ -0.54
LIMS1-207ENST00000422797 CAPRIN2Q6IMN6 1127 aaKnown RBP11.67□□□□□ -0.54
LIMS1-207ENST00000422797 CGB2Q6NT52 195 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 NSMFQ6X4W1 530 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 CENPUQ71F23 418 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 MON1BQ7L1V2 547 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 GSTA5Q7RTV2 222 aa11.67□□□□□ -0.54
LIMS1-207ENST00000422797 LDHDQ86WU2 507 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms