RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 MRPL4Q9BYD3 311 aaKnown RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 FOXP1Q9H334 677 aaPredicted RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 CRISPLD1Q9H336 500 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 BRD9Q9H8M2 597 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 LMAN1LQ9HAT1 526 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 KMT5AQ9NQR1 393 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 AVENQ9NQS1 362 aaPredicted RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 RBM12Q9NTZ6 932 aaKnown RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 C2orf42Q9NWW7 574 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 ZSCAN32Q9NX65 697 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 CNTN3Q9P232 1028 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 ARHGAP28Q9P2N2 729 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 SMG5Q9UPR3 1016 aaKnown RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 NUB1Q9Y5A7 615 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 VWA8A3KMH1 1905 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 MTCL1Q9Y4B5 1905 aaKnown RBP8.87□□□□□ -0.99
VIM-202ENST00000421459 FAM186AA6NE01 2351 aa8.87□□□□□ -0.99
VIM-202ENST00000421459 MYH15Q9Y2K3 1946 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 PPEF2O14830 753 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 LILRB5O75023 590 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 SOAT2O75908 522 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 MCM4P33991 863 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 RPS9P46781 194 aaKnown RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 SATB1Q01826 763 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 CACNB1Q02641 598 aaPredicted RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 GNL2Q13823 731 aaKnown RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 WDR44Q5JSH3 913 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 HAUS3Q68CZ6 603 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 MPZL3Q6UWV2 235 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 PDZD4Q76G19 769 aaPredicted RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 MAP4K3Q8IVH8 894 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 IGSF22Q8N9C0 903 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 FBXO18Q8NFZ0 1043 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 ZSCAN18Q8TBC5 510 aaPredicted RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 FAM3CQ92520 227 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 DDX12PQ92771 950 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 SUSD3Q96L08 255 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 ZNF512Q96ME7 567 aaPredicted RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 CNTNAP3BQ96NU0 1288 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 LRRC3BQ96PB8 259 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 TMEM209Q96SK2 561 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 CNTNAP3Q9BZ76 1288 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 EPC1Q9H2F5 836 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 TMEM134Q9H6X4 195 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 ZFP14Q9HCL3 533 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 ZNF334Q9HCZ1 680 aaPredicted RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 PRMT8Q9NR22 394 aaPredicted RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 TOPORSQ9NS56 1045 aaPredicted RBP8.86□□□□□ -0.99
VIM-202ENST00000421459 ANKFY1Q9P2R3 1169 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 USP18Q9UMW8 372 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 LIMCH1Q9UPQ0 1083 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 DNM3Q9UQ16 869 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 SLC27A5Q9Y2P5 690 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 PCDHGA2Q9Y5H1 932 aa8.86□□□□□ -0.99
VIM-202ENST00000421459 EP300Q09472 2414 aaPredicted RBP8.85□□□□□ -0.99
VIM-202ENST00000421459 PHLPP2Q6ZVD8 1323 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 HEPACAM2A8MVW5 462 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 H7C4K7 107 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 SYN3O14994 580 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 SPTLC1O15269 473 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 NCAM2O15394 837 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 KRT37O76014 449 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 CXCL8P10145 99 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 MCF2P10911 925 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 CPB1P15086 417 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 MUTP22033 750 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 CCNE1P24864 410 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 RPL9P32969 192 aaKnown RBP8.85□□□□□ -0.99
VIM-202ENST00000421459 TNFSF9P41273 254 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 SPEM2Q0P670 501 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 DMP1Q13316 513 aaPredicted RBP8.85□□□□□ -0.99
VIM-202ENST00000421459 PDIA5Q14554 519 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 CYP4A22Q5TCH4 519 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 RTL10Q7L3V2 364 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 TTC9BQ8N6N2 239 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 TMEM161BQ8NDZ6 487 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 SHKBP1Q8TBC3 707 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 SMARCD2Q92925 531 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 ZFYVE19Q96K21 471 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 PNMA5Q96PV4 448 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 NELL2Q99435 816 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 LRRC3Q9BY71 257 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 DNAJC25Q9H1X3 360 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 SLC38A7Q9NVC3 462 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 DYNC1LI1Q9Y6G9 523 aaKnown RBP8.85□□□□□ -0.99
VIM-202ENST00000421459 PIAS3Q9Y6X2 628 aa8.85□□□□□ -0.99
VIM-202ENST00000421459 GPR179Q6PRD1 2367 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 A0A1W2PRU2 124 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 SLC38A8A6NNN8 435 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 LACTBL1A8MY62 500 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 CHURC1-FNTBB4DL54 471 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 ARNTLO00327 626 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 ZNF197O14709 1029 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 ZNF263O14978 683 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 HRO43593 1189 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 MAPTP10636 758 aaKnown RBP8.84□□□□□ -0.99
VIM-202ENST00000421459 CHRNB1P11230 501 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 PSMC3P17980 439 aa8.84□□□□□ -0.99
VIM-202ENST00000421459 MARCKSP29966 332 aaPredicted RBP8.84□□□□□ -0.99
VIM-202ENST00000421459 MAGEA9P43362 315 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms