RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HUS1O60921 280 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 ATP1A1P05023 1023 aaKnown RBP8.95□□□□□ -0.98
USP54-203ENST00000418501 ZNF865P0CJ78 1059 aaPredicted RBP8.95□□□□□ -0.98
USP54-203ENST00000418501 VDRP11473 427 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 LONRF2Q1L5Z9 754 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 ERCC6LQ2NKX8 1250 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 TDRD10Q5VZ19 366 aaKnown RBP8.95□□□□□ -0.98
USP54-203ENST00000418501 SLC39A4Q6P5W5 647 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 LRRC52Q8N7C0 313 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 SLAIN1Q8ND83 568 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 HELQQ8TDG4 1101 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 MTMR12Q9C0I1 747 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 SLITRK6Q9H5Y7 841 aa8.95□□□□□ -0.98
USP54-203ENST00000418501 KRIT1O00522 736 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 ENC1O14682 589 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 STAU1O95793 577 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 CYP3A5P20815 502 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 DNA2P51530 1060 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 MRPS6P82932 125 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 WDR72Q3MJ13 1102 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 MEI1Q5TIA1 1274 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 MMGT1Q8N4V1 131 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 EPS8L1Q8TE68 723 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 HPDLQ96IR7 371 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 ZBTB45Q96K62 511 aaPredicted RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.94□□□□□ -0.98
USP54-203ENST00000418501 NUP85Q9BW27 656 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 CARD9Q9H257 536 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 BCAS3Q9H6U6 928 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 CREBZFQ9NS37 354 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 A0A1B0GUA9 196 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 FKTNO75072 461 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 RNF8O76064 485 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 ECM2O94769 699 aaPredicted RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 ITGA4P13612 1032 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 FLT3LGP49771 235 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 SMC1AQ14683 1233 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 TAS1R3Q7RTX0 852 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 KIAA0319LQ8IZA0 1049 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 BBOF1Q8ND07 529 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 TSC1Q92574 1164 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 NT5C1AQ9BXI3 368 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 CELF4Q9BZC1 486 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 DDX56Q9NY93 547 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 GNEQ9Y223 722 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 ADGRA2Q96PE1 1338 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 PASKQ96RG2 1323 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 MESDQ14696 234 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 KIZQ2M2Z5 673 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 RSPH1Q8WYR4 309 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 RBM41Q96IZ5 413 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 HEXIM2Q96MH2 286 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 POP1Q99575 1024 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 PDZD7Q9H5P4 517 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 MTRF1LQ9UGC7 380 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 MOXD2PA6NHM9 499 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 LACTBL1A8MY62 500 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 SGPL1O95470 568 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 FTCDO95954 541 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 RHOXF2BP0C7M4 288 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 CD58P19256 250 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 PROZP22891 400 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 C15orf39Q6ZRI6 1047 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 UNC93AQ86WB7 457 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 CCHCR1Q8TD31 782 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 LRRC45Q96CN5 670 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 DDX27Q96GQ7 796 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 RHOXF2Q9BQY4 288 aa8.94□□□□□ -0.98
USP54-203ENST00000418501 TSEN34Q9BSV6 310 aaKnown RBP8.94□□□□□ -0.98
USP54-203ENST00000418501 COL11A1P12107 1806 aaPredicted RBP8.93□□□□□ -0.98
USP54-203ENST00000418501 OTOFQ9HC10 1997 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 TSPAN1O60635 241 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 TAF6P49848 677 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 APBA1Q02410 837 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 PIGHQ14442 188 aaPredicted RBP8.93□□□□□ -0.98
USP54-203ENST00000418501 LMBRD2Q68DH5 695 aaPredicted RBP8.93□□□□□ -0.98
USP54-203ENST00000418501 LMO3Q8TAP4 145 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 TRIM62Q9BVG3 475 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 FAM129AQ9BZQ8 928 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 FAM114A2Q9NRY5 505 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.93□□□□□ -0.98
USP54-203ENST00000418501 OPA1O60313 960 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 MTA2O94776 668 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 GAS8O95995 478 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 CYP1A2P05177 515 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 CXCL8P10145 99 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 ARF4P18085 180 aaPredicted RBP8.93□□□□□ -0.98
USP54-203ENST00000418501 ACADSBP45954 432 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 MYL6P60660 151 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 MTMR3Q13615 1198 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 CCDC50Q8IVM0 306 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 RHOT1Q8IXI2 618 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 SLC30A5Q8TAD4 765 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 URGCPQ8TCY9 931 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 ACTRT1Q8TDG2 376 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 DNAJB3Q8WWF6 145 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 ANKRD7Q92527 254 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 USP6NLQ92738 828 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 TATDN2Q93075 761 aa8.93□□□□□ -0.98
USP54-203ENST00000418501 IRX2Q9BZI1 471 aaPredicted RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms