RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 GABBR1Q9UBS5 961 aa3.34□□□□□ -1.87
VPS41-206ENST00000418457 SORCS3Q9UPU3 1222 aa3.34□□□□□ -1.87
VPS41-206ENST00000418457 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP3.34□□□□□ -1.88
VPS41-206ENST00000418457 KIF27Q86VH2 1401 aa3.34□□□□□ -1.88
VPS41-206ENST00000418457 MAPKBP1O60336 1514 aa3.34□□□□□ -1.88
VPS41-206ENST00000418457 KIF21AQ7Z4S6 1674 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 CDHR4A6H8M9 788 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 FAM227AF5H4B4 570 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 KIF3BO15066 747 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 SLC43A1O75387 559 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 SCAF4O95104 1147 aaKnown RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 ADRB1P08588 477 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 SPATA31D3P0C874 917 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 SLC6A4P31645 630 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 PIK3CGP48736 1102 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 RNASE9P60153 205 aaKnown RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 RAB1AP62820 205 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 NKX6-1P78426 367 aaPredicted RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 GBX1Q14549 363 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 PLS1Q14651 629 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 GRM3Q14832 879 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 ANO6Q4KMQ2 910 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 CCDC93Q567U6 631 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 FAM102AQ5T9C2 384 aaPredicted RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 UTP14CQ5TAP6 766 aaKnown RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 RNF207Q6ZRF8 634 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 SPATA31D4Q6ZUB0 917 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 ZNF365Q70YC5 407 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 GDF7Q7Z4P5 450 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 FAM90A1Q86YD7 464 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 IL17DQ8TAD2 202 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 TBC1D15Q8TC07 691 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 CPT1CQ8TCG5 803 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 BRIX1Q8TDN6 353 aaKnown RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 SH3RF3Q8TEJ3 882 aaPredicted RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 EXTL1Q92935 676 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 GPR20Q99678 358 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 LRFN3Q9BTN0 628 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 C1orf43Q9BWL3 253 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 B3GNT5Q9BYG0 378 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 TMEM60Q9H2L4 133 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 FAM204AQ9H8W3 233 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 ARMT1Q9H993 441 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 SARS2Q9NP81 518 aaKnown RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 SLAMF7Q9NQ25 335 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 CNNM1Q9NRU3 951 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 PARPBPQ9NWS1 579 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 GEMIN8Q9NWZ8 242 aaKnown RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 TRPM5Q9NZQ8 1165 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 JKAMPQ9P055 326 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 DDX20Q9UHI6 824 aaKnown RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 ATP11BQ9Y2G3 1177 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 USP15Q9Y4E8 981 aaPredicted RBP3.33□□□□□ -1.88
VPS41-206ENST00000418457 PCDHA1Q9Y5I3 950 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 NCANO14594 1321 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 FANCIQ9NVI1 1328 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 FHAD1B1AJZ9 1412 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 SETD5Q9C0A6 1442 aa3.33□□□□□ -1.88
VPS41-206ENST00000418457 A0A088AWK7 358 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 GRXCR1A8MXD5 290 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 C1QTNF3-AMACRE9PGA6 284 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 PRRG2O14669 202 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 ZNF185O15231 689 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 ANP32CO43423 234 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 FAM20BO75063 409 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 AGFG2O95081 481 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 ANXA1P04083 346 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 CKBP12277 381 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 GCSHP23434 173 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 AGFG1P52594 562 aaKnown RBP3.32□□□□□ -1.88
VPS41-206ENST00000418457 NOMO3P69849 1222 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 GPSM2P81274 684 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 TOB2Q14106 344 aaPredicted RBP3.32□□□□□ -1.88
VPS41-206ENST00000418457 FGL2Q14314 439 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 NOMO2Q5JPE7 1267 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 CCDC181Q5TID7 509 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 AGAP9Q5VTM2 703 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 TSHZ3Q63HK5 1081 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 METRNLQ641Q3 311 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 PPP4R4Q6NUP7 873 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 NPNTQ6UXI9 565 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 SRGAP1Q7Z6B7 1085 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 PPP1R3BQ86XI6 285 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 DGKHQ86XP1 1220 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 PDSS2Q86YH6 399 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 ZFPM1Q8IX07 1006 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 RHOT2Q8IXI1 618 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 OR56A1Q8NGH5 318 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 PLBD2Q8NHP8 589 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 NUP133Q8WUM0 1156 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 TNPO1Q92973 898 aaKnown RBP3.32□□□□□ -1.88
VPS41-206ENST00000418457 PLEKHG4BQ96PX9 1271 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 NEU1Q99519 415 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 KRTAP9-9Q9BYP9 154 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 KRTAP9-4Q9BYQ2 154 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 MRPL46Q9H2W6 279 aaKnown RBP3.32□□□□□ -1.88
VPS41-206ENST00000418457 RNPEPQ9H4A4 650 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 ZNF703Q9H7S9 590 aaPredicted RBP3.32□□□□□ -1.88
VPS41-206ENST00000418457 BRD9Q9H8M2 597 aa3.32□□□□□ -1.88
VPS41-206ENST00000418457 KLHL11Q9NVR0 708 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms