RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SMC3Q9UQE7 1217 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 KIF3AQ9Y496 699 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 INSL5Q9Y5Q6 135 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 ARHGEF37A1IGU5 675 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 LACTBL1A8MY62 500 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 H7C4K7 107 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 SYN3O14994 580 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 POU2F2P09086 479 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 SP9P0CG40 484 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 ATF2P15336 505 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 RPL9P32969 192 aaKnown RBP12.62□□□□□ -0.39
USP4-204ENST00000416417 NCKAP1LP55160 1127 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 TWF1Q12792 350 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 KARSQ15046 597 aaKnown RBP12.62□□□□□ -0.39
USP4-204ENST00000416417 PRSS36Q5K4E3 855 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 HAUS6Q7Z4H7 955 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 GPIHBP1Q8IV16 184 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 C1orf210Q8IVY1 113 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 MAML2Q8IZL2 1156 aaPredicted RBP12.62□□□□□ -0.39
USP4-204ENST00000416417 BLOC1S4Q9NUP1 217 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 CEP72Q9P209 647 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 KCNH3Q9ULD8 1083 aa12.62□□□□□ -0.39
USP4-204ENST00000416417 KANSL1LA0AUZ9 987 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 TTC26A0AVF1 554 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 FAM170BA6NMN3 283 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 TISP43B9A030 160 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 K7ENM7 598 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 VNN2O95498 520 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 MYL4P12829 197 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 CPB1P15086 417 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 PLCG1P19174 1290 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 FCARP24071 287 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 LIG4P49917 911 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 ENOX2Q16206 610 aaKnown RBP12.61□□□□□ -0.39
USP4-204ENST00000416417 FAM78AQ5JUQ0 283 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 LARP1BQ659C4 914 aaKnown RBP12.61□□□□□ -0.39
USP4-204ENST00000416417 ZNF280DQ6N043 979 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 ZPBP2Q6X784 338 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 TPRG1Q6ZUI0 275 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 TCEAL8Q8IYN2 117 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 MYCT1Q8N699 235 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 CRISPLD1Q9H336 500 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 HEBP1Q9NRV9 189 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 PCDHB8Q9UN66 801 aa12.61□□□□□ -0.39
USP4-204ENST00000416417 MOSPD3O75425 235 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 SOAT2O75908 522 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 FAM13AO94988 1023 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 CLTAP09496 248 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 MARCKSP29966 332 aaPredicted RBP12.6□□□□□ -0.39
USP4-204ENST00000416417 NMT1P30419 496 aaKnown RBP12.6□□□□□ -0.39
USP4-204ENST00000416417 UBA7P41226 1012 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 VIPR2P41587 438 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 ARL6IP4Q66PJ3 421 aaKnown RBP12.6□□□□□ -0.39
USP4-204ENST00000416417 SLC39A4Q6P5W5 647 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 SHDQ96IW2 340 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 TMEM209Q96SK2 561 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 LTB4R2Q9NPC1 389 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 SPATA6Q9NWH7 488 aaPredicted RBP12.6□□□□□ -0.39
USP4-204ENST00000416417 LARSQ9P2J5 1176 aaKnown RBP12.6□□□□□ -0.39
USP4-204ENST00000416417 TBX20Q9UMR3 447 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 WDR87Q6ZQQ6 2873 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 NCANO14594 1321 aa12.6□□□□□ -0.39
USP4-204ENST00000416417 SHISA7A6NL88 538 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 ANKRD63C9JTQ0 380 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 TULP1O00294 542 aaPredicted RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 HNRNPDLO14979 420 aaKnown RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 FAM189A1O60320 539 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 ECI2O75521 394 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 KRT18P05783 430 aaKnown RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 TARSP26639 723 aaKnown RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 PPP2R3AQ06190 1150 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 SF3A1Q15459 793 aaKnown RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 ZBTB6Q15916 424 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 ZC2HC1CQ53FD0 456 aaPredicted RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 JADE1Q6IE81 842 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 TSSK4Q6SA08 328 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 DSTYKQ6XUX3 929 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 USP49Q70CQ1 688 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 PDZD4Q76G19 769 aaPredicted RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 DCLK2Q8N568 766 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 TTC9BQ8N6N2 239 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 APPL2Q8NEU8 664 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 RASSF8Q8NHQ8 419 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 CALML4Q96GE6 196 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 DDX23Q9BUQ8 820 aaKnown RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 GDE1Q9NZC3 331 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 AFF4Q9UHB7 1163 aaKnown RBP12.59□□□□□ -0.39
USP4-204ENST00000416417 SLC27A5Q9Y2P5 690 aa12.59□□□□□ -0.39
USP4-204ENST00000416417 VPS37CA5D8V6 355 aaPredicted RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 M0QZQ0 153 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 SPTLC1O15269 473 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 LMNAP02545 664 aaKnown RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 CENPBP07199 599 aaPredicted RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 NFICP08651 508 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 LRPAP1P30533 357 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 PRKCQQ04759 706 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 YWHAHQ04917 246 aaPredicted RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 CSTF1Q05048 431 aaKnown RBP12.58□□□□□ -0.4
USP4-204ENST00000416417 TEAD2Q15562 447 aa12.58□□□□□ -0.4
USP4-204ENST00000416417 CYP4A22Q5TCH4 519 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms