RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RBAKQ9NYW8 714 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 TMCO1Q9UM00 188 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PRR23AA6NEV1 266 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 RGL2O15211 777 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 TM9SF1O15321 606 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ENTPD3O75355 529 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 KCNA3P22001 575 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ETFBP38117 255 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 FXR2P51116 673 aaKnown RBP eCLIP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 TRIP13Q15645 432 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 SLC27A3Q5K4L6 730 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PLEKHM3Q6ZWE6 761 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 P3H2Q8IVL5 708 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 STARD8Q92502 1023 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PLEKHA8Q96JA3 519 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 SEC16BQ96JE7 1060 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 SH3GL2Q99962 352 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 TRIM9Q9C026 710 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 TMEM8AQ9HCN3 771 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PIH1D3Q9NQM4 214 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 NARFQ9UHQ1 456 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 PCSK1P29120 753 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ST13P50502 369 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 CDH6P55285 790 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 TPI1P60174 286 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 CNGA2Q16280 664 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 OLFML2BQ68BL8 750 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ANGPTL8Q6UXH0 198 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 KRT27Q7Z3Y8 459 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 HAUS6Q7Z4H7 955 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 DCLK2Q8N568 766 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ZFRQ96KR1 1074 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 MAGEB18Q96M61 343 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ASB2Q96Q27 587 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 RBM15Q96T37 977 aaKnown RBP eCLIP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 DCLRE1BQ9H816 532 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 ZC3H7BQ9UGR2 993 aaKnown RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 GGA2Q9UJY4 613 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 FBXO2Q9UK22 296 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-203ENST00000409050 SUFUQ9UMX1 484 aa6.39□□□□□ -1.39
SCN1A-203ENST00000409050 VPS4BO75351 444 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 F9P00740 461 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 EXOSC10Q01780 885 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 GFPT1Q06210 699 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DPYDQ12882 1025 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 CTTNQ14247 550 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 HIST2H2ACQ16777 129 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 RABL6Q3YEC7 729 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 HIST2H2AA3Q6FI13 130 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 UNC5CLQ8IV45 518 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DDX47Q9H0S4 455 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 MTIF3Q9H2K0 278 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 SMYD3Q9H7B4 428 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 L2HGDHQ9H9P8 463 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DYRK4Q9NR20 520 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ARHGEF38Q9NXL2 777 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 RRN3Q9NYV6 651 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 SORCS3Q9UPU3 1222 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 CROCC2H7BZ55 1655 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 SETBP1Q9Y6X0 1596 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 C15orf38-AP3S2A0A0A6YYH1 394 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 KATNA1O75449 491 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ALBP02768 609 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 GZMAP12544 262 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 PAX3P23760 479 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 GEMP55040 296 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 GEMIN4P57678 1058 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 RBBP7Q16576 425 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 FAM102AQ5T9C2 384 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ZFP1Q6P2D0 407 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ARPINQ7Z6K5 226 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ZBTB33Q86T24 672 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 SVOPQ8N4V2 548 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP38Q8NB14 1042 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 APPL2Q8NEU8 664 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 RASGRP4Q8TDF6 673 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 ARHGEF1Q92888 912 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 APOL6Q9BWW8 343 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 PUS3Q9BZE2 481 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 UBE2OQ9C0C9 1292 aaKnown RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 FAM192AQ9GZU8 254 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 GOLPH3Q9H4A6 298 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 STK39Q9UEW8 545 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 PNMA8CA0A1B0GUJ8 204 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 MAGEB16A2A368 324 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L15C9J2P7 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L10C9JJH3 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L13C9JLJ4 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L11C9JVI0 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L18D6R9N7 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L22D6RA61 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L17D6RBQ6 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L19D6RCP7 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 USP17L20D6RJB6 530 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 DPYSL4O14531 572 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 NCAM2O15394 837 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 OCM2P0CE71 109 aa6.38□□□□□ -1.39
SCN1A-203ENST00000409050 OCMP0CE72 109 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-203ENST00000409050 TSHRP16473 764 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms