RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 TNFSF13BQ9Y275 285 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 SIT1Q9Y3P8 196 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 STK24Q9Y6E0 443 aa11.3□□□□□ -0.6
NEDD8-202ENST00000396828 FAM237AA0A1B0GTK4 181 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 WDR27A2RRH5 827 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 HNRNPA1P09651 372 aaKnown RBP eCLIP11.29□□□□□ -0.6
NEDD8-202ENST00000396828 CD72P21854 359 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 MUTP22033 750 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 PROZP22891 400 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 HOXA9P31269 272 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 GRM5P41594 1212 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 NDUFA8P51970 172 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 EFNA5P52803 228 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 STARD6P59095 220 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 RAD51AP2Q09MP3 1159 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 ELAVL2Q12926 359 aaKnown RBP11.29□□□□□ -0.6
NEDD8-202ENST00000396828 KRT79Q5XKE5 535 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 HAUS3Q68CZ6 603 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 RINT1Q6NUQ1 792 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 CAVIN1Q6NZI2 390 aaKnown RBP11.29□□□□□ -0.6
NEDD8-202ENST00000396828 C1orf186Q6ZWK4 172 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 NPAS3Q8IXF0 933 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 GOLPH3LQ9H4A5 285 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 ARHGAP28Q9P2N2 729 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 HPSEQ9Y251 543 aa11.29□□□□□ -0.6
NEDD8-202ENST00000396828 CACNA1AO00555 2505 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 SHISA7A6NL88 538 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 SLC16A4O15374 487 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 SLC26A4O43511 780 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 TBC1D4O60343 1298 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 ZNF202O95125 648 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 LETM1O95202 739 aaPredicted RBP11.28□□□□□ -0.6
NEDD8-202ENST00000396828 SEC24AO95486 1093 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 SP9P0CG40 484 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 ROR1Q01973 937 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 ZNF568Q3ZCX4 644 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 PABPC1LQ4VXU2 614 aaKnown RBP11.28□□□□□ -0.6
NEDD8-202ENST00000396828 VARS2Q5ST30 1063 aaKnown RBP11.28□□□□□ -0.6
NEDD8-202ENST00000396828 CCDC183Q5T5S1 534 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 FMR1NBQ8N0W7 255 aaPredicted RBP11.28□□□□□ -0.6
NEDD8-202ENST00000396828 ENGASEQ8NFI3 743 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 PJA1Q8NG27 643 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 TCEAL4Q96EI5 215 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 MCRS1Q96EZ8 462 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 CALML4Q96GE6 196 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 EPSTI1Q96J88 318 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 CDK5RAP3Q96JB5 506 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 TIGD1Q96MW7 591 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 PNMA5Q96PV4 448 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 PLIN2Q99541 437 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 CCSER1Q9C0I3 900 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 HAPLN2Q9GZV7 340 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 TMEM134Q9H6X4 195 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 USP25Q9UHP3 1055 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 HOOK1Q9UJC3 728 aaKnown RBP11.28□□□□□ -0.6
NEDD8-202ENST00000396828 BACE2Q9Y5Z0 518 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 ZFP37Q9Y6Q3 630 aaPredicted RBP11.28□□□□□ -0.6
NEDD8-202ENST00000396828 PHLPP2Q6ZVD8 1323 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 CITO14578 2027 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 FANCMQ8IYD8 2048 aa11.28□□□□□ -0.6
NEDD8-202ENST00000396828 OTOGLQ3ZCN5 2332 aa11.27□□□□□ -0.6
NEDD8-202ENST00000396828 PDCD11Q14690 1871 aaKnown RBP11.27□□□□□ -0.6
NEDD8-202ENST00000396828 GPR179Q6PRD1 2367 aa11.27□□□□□ -0.6
NEDD8-202ENST00000396828 MIA3Q5JRA6 1907 aa11.27□□□□□ -0.6
NEDD8-202ENST00000396828 NPHP3-ACAD11A0A0J9YXS1 232 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 PODXLO00592 558 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 POLR2DO15514 142 aaKnown RBP11.27□□□□□ -0.61
NEDD8-202ENST00000396828 XYLBO75191 536 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 ABLIM3O94929 683 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 POU2F2P09086 479 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 HARSP12081 509 aaKnown RBP11.27□□□□□ -0.61
NEDD8-202ENST00000396828 CEBPBP17676 345 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 RFX1P22670 979 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 CCR2P41597 374 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 ARPP19P56211 112 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 CACNB1Q02641 598 aaPredicted RBP11.27□□□□□ -0.61
NEDD8-202ENST00000396828 SPAG1Q07617 926 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 ZRSR1Q15695 479 aaKnown RBP11.27□□□□□ -0.61
NEDD8-202ENST00000396828 UVSSAQ2YD98 709 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 SLC10A6Q3KNW5 377 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 SLC44A4Q53GD3 710 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 TANGO2Q6ICL3 276 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 PDXDC1Q6P996 788 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 C1orf210Q8IVY1 113 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 CEP57L1Q8IYX8 460 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 IQUBQ8NA54 791 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 LRRC15Q8TF66 581 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 DDX23Q9BUQ8 820 aaKnown RBP11.27□□□□□ -0.61
NEDD8-202ENST00000396828 MRPL4Q9BYD3 311 aaKnown RBP11.27□□□□□ -0.61
NEDD8-202ENST00000396828 NUP62CLQ9H1M0 184 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 TNMDQ9H2S6 317 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 KMT5AQ9NQR1 393 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 TUBGCP4Q9UGJ1 667 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 DNM3Q9UQ16 869 aa11.27□□□□□ -0.61
NEDD8-202ENST00000396828 MRPS23Q9Y3D9 190 aaKnown RBP11.27□□□□□ -0.61
NEDD8-202ENST00000396828 PATJQ8NI35 1801 aa11.26□□□□□ -0.61
NEDD8-202ENST00000396828 KANSL1LA0AUZ9 987 aa11.26□□□□□ -0.61
NEDD8-202ENST00000396828 ARHGEF37A1IGU5 675 aa11.26□□□□□ -0.61
NEDD8-202ENST00000396828 RHOP08100 348 aa11.26□□□□□ -0.61
NEDD8-202ENST00000396828 KCNE1P15382 129 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms