RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 MYO7AQ13402 2215 aa20.75■□□□□ 0.91
HOXA9-202ENST00000396345 PRRC2BQ5JSZ5 2229 aaKnown RBP20.75■□□□□ 0.91
HOXA9-202ENST00000396345 ANO9A1A5B4 782 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 LRRIQ3A6PVS8 624 aaPredicted RBP20.74■□□□□ 0.91
HOXA9-202ENST00000396345 PIRO00625 290 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 PPEF2O14830 753 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 SLC16A3O15427 465 aaKnown RBP20.74■□□□□ 0.91
HOXA9-202ENST00000396345 CTSAP10619 480 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 BRCC3P46736 316 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 VAMP7P51809 220 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 SMC1AQ14683 1233 aaKnown RBP20.74■□□□□ 0.91
HOXA9-202ENST00000396345 USP41Q3LFD5 358 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 TIGD5Q53EQ6 642 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 USP37Q86T82 979 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 RNF168Q8IYW5 571 aaPredicted RBP20.74■□□□□ 0.91
HOXA9-202ENST00000396345 MICALL1Q8N3F8 863 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 CSGALNACT2Q8N6G5 542 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 C1orf127Q8N9H9 656 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 CEP63Q96MT8 703 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 ITGA11Q9UKX5 1188 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 PCDHGC5Q9Y5F6 944 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 ATG2AQ2TAZ0 1938 aa20.74■□□□□ 0.91
HOXA9-202ENST00000396345 CXCL14O95715 111 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 ITGB3P05106 788 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 POLR2BP30876 1174 aaKnown RBP20.73■□□□□ 0.91
HOXA9-202ENST00000396345 CA8P35219 290 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 AP3M2P53677 418 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 DLG4P78352 724 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 FAM171A1Q5VUB5 890 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 FILIP1Q7Z7B0 1213 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 ZNF516Q92618 1163 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 NSUN3Q9H649 340 aaKnown RBP20.73■□□□□ 0.91
HOXA9-202ENST00000396345 AGAP1Q9UPQ3 857 aa20.73■□□□□ 0.91
HOXA9-202ENST00000396345 I3L4J1 428 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 URODP06132 367 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 KRT19P08727 400 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 PAX3P23760 479 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 ERCC5P28715 1186 aaPredicted RBP20.72■□□□□ 0.91
HOXA9-202ENST00000396345 GLUD2P49448 558 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 CLDN10P78369 228 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 RBP5P82980 135 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 ENPEPQ07075 957 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 BFSP1Q12934 665 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 NFKBIBQ15653 356 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 CT47A1Q5JQC4 288 aaPredicted RBP20.72■□□□□ 0.91
HOXA9-202ENST00000396345 KIAA1841Q6NSI8 718 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 TRAPPC11Q7Z392 1133 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 CEP57Q86XR8 500 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 AUTS2Q8WXX7 1259 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 B3GALT6Q96L58 329 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 CHST7Q9NS84 486 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 ANO10Q9NW15 660 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 SIX4Q9UIU6 781 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 SSX2IPQ9Y2D8 614 aa20.72■□□□□ 0.91
HOXA9-202ENST00000396345 R3HCC1Q9Y3T6 440 aaKnown RBP20.72■□□□□ 0.91
HOXA9-202ENST00000396345 C2orf71A6NGG8 1288 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 IKBKBO14920 756 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 LETM1O95202 739 aaPredicted RBP20.71■□□□□ 0.91
HOXA9-202ENST00000396345 FGFR1OPO95684 399 aaKnown RBP20.71■□□□□ 0.91
HOXA9-202ENST00000396345 TAF6P49848 677 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 LILRA4P59901 499 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 DSG1Q02413 1049 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 PTPN14Q15678 1187 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 STX1AQ16623 288 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 KIAA0319Q5VV43 1072 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.71■□□□□ 0.91
HOXA9-202ENST00000396345 MRPL43Q8N983 215 aaKnown RBP20.71■□□□□ 0.91
HOXA9-202ENST00000396345 CXorf38Q8TB03 319 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 PPP2R3CQ969Q6 453 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 BORCS6Q96GS4 357 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 SUSD3Q96L08 255 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 ZNF560Q96MR9 790 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 MED15Q96RN5 788 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 TTPALQ9BTX7 342 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 SRRTQ9BXP5 876 aaKnown RBP20.71■□□□□ 0.91
HOXA9-202ENST00000396345 MRPL17Q9NRX2 175 aaKnown RBP20.71■□□□□ 0.91
HOXA9-202ENST00000396345 ARMCX3Q9UH62 379 aaPredicted RBP20.71■□□□□ 0.91
HOXA9-202ENST00000396345 SCN1AP35498 2009 aa20.71■□□□□ 0.91
HOXA9-202ENST00000396345 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.7■□□□□ 0.9
HOXA9-202ENST00000396345 HIDE1A8MVS5 230 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 C2CD2LO14523 706 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 PHACTR2O75167 634 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 TRIM49P0CI25 452 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 TRIM49CP0CI26 452 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 PNPLA4P41247 253 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 AARSP49588 968 aaKnown RBP eCLIP20.7■□□□□ 0.9
HOXA9-202ENST00000396345 MCCD1P59942 119 aaPredicted RBP20.7■□□□□ 0.9
HOXA9-202ENST00000396345 CCDC85BQ15834 202 aaPredicted RBP20.7■□□□□ 0.9
HOXA9-202ENST00000396345 CCDC40Q4G0X9 1142 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 TCEAL5Q5H9L2 206 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 C1orf220Q5T0J3 134 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 SCARA3Q6AZY7 606 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 DSTYKQ6XUX3 929 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 LRRC52Q8N7C0 313 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 RIN2Q8WYP3 895 aaPredicted RBP20.7■□□□□ 0.9
HOXA9-202ENST00000396345 METTL14Q9HCE5 456 aaKnown RBP20.7■□□□□ 0.9
HOXA9-202ENST00000396345 IRAK3Q9Y616 596 aa20.7■□□□□ 0.9
HOXA9-202ENST00000396345 M0QZQ0 153 aa20.69■□□□□ 0.9
HOXA9-202ENST00000396345 SYN3O14994 580 aa20.69■□□□□ 0.9
HOXA9-202ENST00000396345 SPTLC1O15269 473 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms