RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 PLVAPQ9BX97 442 aa21.93■■□□□ 1.1
CLK3-202ENST00000395066 ECT2Q9H8V3 914 aa21.93■■□□□ 1.1
CLK3-202ENST00000395066 UMODL1Q5DID0 1318 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 EGFRP00533 1210 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 NAA25Q14CX7 972 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 TDRD10Q5VZ19 366 aaKnown RBP21.92■■□□□ 1.1
CLK3-202ENST00000395066 CYP4F22Q6NT55 531 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 SUPT20HQ8NEM7 779 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 FLAD1Q8NFF5 587 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 ZBTB45Q96K62 511 aaPredicted RBP21.92■■□□□ 1.1
CLK3-202ENST00000395066 ADAM33Q9BZ11 813 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 PCDHA10Q9Y5I2 948 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 WDR46O15213 610 aaKnown RBP21.92■■□□□ 1.1
CLK3-202ENST00000395066 ANP32DO95626 131 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 HLA-DRAP01903 254 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 KRT76Q01546 638 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 KAZNQ674X7 775 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 NLRX1Q86UT6 975 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 AGAP11Q8TF27 550 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 SERPINB12Q96P63 405 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 C15orf41Q9Y2V0 281 aa21.92■■□□□ 1.1
CLK3-202ENST00000395066 CTDP1Q9Y5B0 961 aaPredicted RBP21.92■■□□□ 1.1
CLK3-202ENST00000395066 PLSCR1O15162 318 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 SUN1O94901 812 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 GAS8O95995 478 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 KRT10P13645 584 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 ALADP13716 330 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 SLC8A3P57103 927 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 GCNT1Q02742 428 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 GALNTL6Q49A17 601 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 CAPN12Q6ZSI9 719 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 KIRREL3Q8IZU9 778 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 ATG4CQ96DT6 458 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 THOC1Q96FV9 657 aaKnown RBP21.91■■□□□ 1.1
CLK3-202ENST00000395066 TIPINQ9BVW5 301 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 PDGFDQ9GZP0 370 aaPredicted RBP21.91■■□□□ 1.1
CLK3-202ENST00000395066 PNMA3Q9UL41 463 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 ECM2O94769 699 aaPredicted RBP21.91■■□□□ 1.1
CLK3-202ENST00000395066 FDX1P10109 184 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 PIK3CAP42336 1068 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 ALDH5A1P51649 535 aaPredicted RBP21.91■■□□□ 1.1
CLK3-202ENST00000395066 TMEM270Q6UE05 265 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 MON1BQ7L1V2 547 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 CCDC60Q8IWA6 550 aaPredicted RBP21.91■■□□□ 1.1
CLK3-202ENST00000395066 KIF2BQ8N4N8 673 aa21.91■■□□□ 1.1
CLK3-202ENST00000395066 ACSF2Q96CM8 615 aaPredicted RBP21.91■■□□□ 1.1
CLK3-202ENST00000395066 APOBEC3GQ9HC16 384 aaKnown RBP21.91■■□□□ 1.1
CLK3-202ENST00000395066 STBD1O95210 358 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 ZSCAN5DPP0CG00 497 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 SFNP31947 248 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 KLF1Q13351 362 aaPredicted RBP21.9■■□□□ 1.1
CLK3-202ENST00000395066 IZUMO3Q5VZ72 239 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 GBP7Q8N8V2 638 aaPredicted RBP21.9■■□□□ 1.1
CLK3-202ENST00000395066 L3MBTL3Q96JM7 780 aaPredicted RBP21.9■■□□□ 1.1
CLK3-202ENST00000395066 TRAIPQ9BWF2 469 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 HAPLN2Q9GZV7 340 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 POLR3FQ9H1D9 316 aaPredicted RBP21.9■■□□□ 1.1
CLK3-202ENST00000395066 RPAP3Q9H6T3 665 aaPredicted RBP21.9■■□□□ 1.1
CLK3-202ENST00000395066 FZD1Q9UP38 647 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 IGF2BP3O00425 579 aaKnown RBP eCLIP21.9■■□□□ 1.1
CLK3-202ENST00000395066 MTERF2Q49AM1 385 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 ZFYVE27Q5T4F4 411 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 MAB21L3Q8N8X9 362 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 ATL2Q8NHH9 583 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 TMEM143Q96AN5 459 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 NAALADL1Q9UQQ1 740 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 PCDHB2Q9Y5E7 798 aa21.9■■□□□ 1.1
CLK3-202ENST00000395066 RGS20O76081 388 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 PROSCO94903 275 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 VNN1O95497 513 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 ETS1P14921 441 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 LIG4P49917 911 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 COPS2P61201 443 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 ZNF365Q70YC5 407 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 GSTA5Q7RTV2 222 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 FAM212AQ96EL1 285 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 FNBP1Q96RU3 617 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 NTPCRQ9BSD7 190 aaKnown RBP21.89■■□□□ 1.09
CLK3-202ENST00000395066 OSBPL8Q9BZF1 889 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 TRIM33Q9UPN9 1127 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 ZNF541Q9H0D2 1346 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 GSTTP1A0A1W2PQM5 241 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 BNIP1Q12981 228 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 C15orf39Q6ZRI6 1047 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 KLHL29Q96CT2 875 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 MRRFQ96E11 262 aaKnown RBP21.89■■□□□ 1.09
CLK3-202ENST00000395066 FHDC1Q9C0D6 1143 aaPredicted RBP21.89■■□□□ 1.09
CLK3-202ENST00000395066 RNF146Q9NTX7 359 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 NOP53Q9NZM5 478 aaKnown RBP21.89■■□□□ 1.09
CLK3-202ENST00000395066 ADAM22Q9P0K1 906 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.89■■□□□ 1.09
CLK3-202ENST00000395066 NEU2Q9Y3R4 380 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 PCDHB4Q9Y5E5 795 aa21.89■■□□□ 1.09
CLK3-202ENST00000395066 WDR81Q562E7 1941 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 NR3C2P08235 984 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 HARSP12081 509 aaKnown RBP21.88■■□□□ 1.09
CLK3-202ENST00000395066 PAX7P23759 505 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 RPL7AP62424 266 aaKnown RBP21.88■■□□□ 1.09
CLK3-202ENST00000395066 PRKCEQ02156 737 aa21.88■■□□□ 1.09
CLK3-202ENST00000395066 CENPCQ03188 943 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms