RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 NEUROG2Q9H2A3 272 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 GDF3Q9NR23 364 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 GOLGA6AQ9NYA3 693 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 GOLGA8SH3BPF8 625 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 O00370 1275 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 GH1P01241 217 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 TNNC2P02585 160 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 BPIFB4P59827 614 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ODF2Q5BJF6 829 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 KAZNQ674X7 775 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 C15orf39Q6ZRI6 1047 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ENOSF1Q7L5Y1 443 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 CCDC25Q86WR0 208 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 BRSK2Q8IWQ3 736 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 C2orf69Q8N8R5 385 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ZNF606Q8WXB4 792 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ACSF2Q96CM8 615 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-203ENST00000394269 UBXN6Q9BZV1 441 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 CARD9Q9H257 536 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 CISHQ9NSE2 258 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ATP8A1Q9Y2Q0 1164 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 STYXL1Q9Y6J8 313 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 LAMA3Q16787 3333 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 GPR25O00155 361 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ABCD1P33897 745 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 GTF2A2P52657 109 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 LACTBP83111 547 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ARHGAP1Q07960 439 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 LAMC2Q13753 1193 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 CYP4A22Q5TCH4 519 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ZPBP2Q6X784 338 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 GPR142Q7Z601 462 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 C1orf131Q8NDD1 294 aaKnown RBP11.88□□□□□ -0.51
TCOF1-203ENST00000394269 ATG4AQ8WYN0 398 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 MED4Q9NPJ6 270 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 DAAM1Q9Y4D1 1078 aa11.88□□□□□ -0.51
TCOF1-203ENST00000394269 MCM3APO60318 1980 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 PI4K2BG5E9Z4 385 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 CCDC188H7C350 402 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 ACKR2O00590 384 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 PMM2O15305 246 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 ERLIN2O94905 339 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 RWDD2BP57060 319 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 CEP85LQ5SZL2 805 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 DCUN1D2Q6PH85 259 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 MPZL3Q6UWV2 235 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 ANKRD36BP1Q96IX9 119 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 NAP1L3Q99457 506 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-203ENST00000394269 SYNCQ9H7C4 482 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 TMEM59LQ9UK28 342 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 TLR3O15455 904 aaKnown RBP11.87□□□□□ -0.51
TCOF1-203ENST00000394269 NFICP08651 508 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 HPDP32754 393 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-203ENST00000394269 DHX9Q08211 1270 aaKnown RBP11.87□□□□□ -0.51
TCOF1-203ENST00000394269 PPFIA1Q13136 1202 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 LIN9Q5TKA1 542 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 TAPT1Q6NXT6 567 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 EFCAB13Q8IY85 973 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 OR6J1Q8NGC5 347 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 TMEM174Q8WUU8 243 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 RNF25Q96BH1 459 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-203ENST00000394269 MS4A4AQ96JQ5 239 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 C2orf40Q9H1Z8 148 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 ADGRA2Q96PE1 1338 aa11.87□□□□□ -0.51
TCOF1-203ENST00000394269 ZC3H11AO75152 810 aaKnown RBP eCLIP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 ITGB3P05106 788 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 STAG3L1P0CL83 205 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 ACO1P21399 889 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 HUNKP57058 714 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 RPL7AP62424 266 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 ATP13A4Q4VNC1 1196 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CCDC137Q6PK04 289 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 ABRAQ8N0Z2 381 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 PTPN18Q99952 460 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 JPH2Q9BR39 696 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CDT1Q9H211 546 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 DNAJC17Q9NVM6 304 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 HES2Q9Y543 173 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 LACTBL1A8MY62 500 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 MIF4GDA9UHW6 222 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 SNAI1O95863 264 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CYP1A2P05177 515 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 SMPD1P17405 629 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CYP2B6P20813 491 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CYP2C19P33261 490 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CTNNA1P35221 906 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 PHKA2P46019 1235 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 PTENP60484 403 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 PPP1R7Q15435 360 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 RASGEF1CQ8N431 466 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 CCDC114Q96M63 670 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 PLAAQ9Y263 795 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 TLDC2A0PJX2 215 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 KIAA0391O15091 583 aaKnown RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 LGR5O75473 907 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 UNGP13051 313 aaPredicted RBP11.86□□□□□ -0.51
TCOF1-203ENST00000394269 SGSM1Q2NKQ1 1148 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 WDR49Q8IV35 697 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 KIAA0319LQ8IZA0 1049 aa11.86□□□□□ -0.51
TCOF1-203ENST00000394269 ZDHHC14Q8IZN3 488 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms