RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SUN1O94901 812 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 SEMA3FQ13275 785 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 DMC1Q14565 340 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 TAF1BQ53T94 588 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 DHTKD1Q96HY7 919 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 TRIM55Q9BYV6 548 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 IQCMA0A1B0GVH7 501 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 GYG2O15488 501 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 MLH1P40692 756 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 CAPZA2P47755 286 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 SRSF11Q05519 484 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 CYP4X1Q8N118 509 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 XPO7Q9UIA9 1087 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 CHMP2BQ9UQN3 213 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 GOLGA8TH3BQL2 631 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 PRKCEQ02156 737 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 C3orf67Q6ZVT6 689 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 PTAR1Q7Z6K3 402 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 PDIK1LQ8N165 341 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 COG1Q8WTW3 980 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 AK8Q96MA6 479 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 FHDC1Q9C0D6 1143 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 EPS15L1Q9UBC2 864 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 POLLQ9UGP5 575 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 LSM7Q9UK45 103 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 MLH3Q9UHC1 1453 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 ERVV-1B6SEH8 477 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 GJB6O95452 261 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 ADCYAP1R1P41586 468 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 ILDR1Q86SU0 546 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 CAMKK1Q8N5S9 505 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 SYT2Q8N9I0 419 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 C17orf102A2RUQ5 167 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 PCNAP12004 261 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 CLK2P49760 499 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 FLOT2Q14254 428 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 ANKRD13AQ8IZ07 590 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 DEFB119Q8N690 84 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 EMC1Q8N766 993 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 CCDC197Q8NCU1 140 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 DIS3LQ8TF46 1054 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 NAF1Q96HR8 494 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 PRMT1Q99873 361 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 IQANK1A0A1B0GTG1 560 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 A0A1W2PQ67 120 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 PDHXO00330 501 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 GRIN3BO60391 1043 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 TADA3O75528 432 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 SPATA18Q8TC71 538 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 HES6Q96HZ4 224 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 CELF6Q96J87 481 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 SLC39A10Q9ULF5 831 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 NPHP4O75161 1426 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 SMNDC1O75940 238 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 ATP1A1P05023 1023 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 GJB1P08034 283 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 HIST1H2AGP0C0S8 130 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 TAC1P20366 129 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 HIST1H2ADP20671 130 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 EFEMP1Q12805 493 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 CUL1Q13616 776 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 MROH9Q5TGP6 573 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 MCTP2Q6DN12 878 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 HIST1H2AHQ96KK5 128 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 ZNF512BQ96KM6 892 aaPredicted RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 HIST1H2AJQ99878 128 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 H2AFJQ9BTM1 129 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 EEF2KO00418 725 aaKnown RBP7.73□□□□□ -1.17
VPS13A-202ENST00000357409 HNF4AP41235 474 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 EPS8Q12929 822 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 WHAMMP3Q1A5X7 153 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 IZUMO3Q5VZ72 239 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 GPRC5AQ8NFJ5 357 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 USP6NLQ92738 828 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 SCUBE2Q9NQ36 999 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 PARD3Q8TEW0 1356 aa7.73□□□□□ -1.17
VPS13A-202ENST00000357409 RALGAPBQ86X10 1494 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 PPARGP37231 505 aaPredicted RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 CARSP49589 748 aaKnown RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 ZNF445P59923 1031 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 ATF7IP2Q5U623 682 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 MMS22LQ6ZRQ5 1243 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 SH2D3CQ8N5H7 860 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 CDCA5Q96FF9 252 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 EPAS1Q99814 870 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TUFT1Q9NNX1 390 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TBC1D22BQ9NU19 505 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 VTI1BQ9UEU0 232 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TEX14Q8IWB6 1497 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 FLT1P17948 1338 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 RHOBTB1O94844 696 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 HARS2P49590 506 aaKnown RBP7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TAF5Q15542 800 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 SHC4Q6S5L8 630 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 TRIML1Q8N9V2 468 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 VPS39Q96JC1 886 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 RWDD2AQ9UIY3 292 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 SLC12A8A0AV02 714 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 H3BRB1 525 aa7.72□□□□□ -1.17
VPS13A-202ENST00000357409 FAM86B2P0C5J1 330 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms