RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 PTK6Q13882 451 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 SVOPQ8N4V2 548 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 DIS3LQ8TF46 1054 aaKnown RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 TLR7Q9NYK1 1049 aaKnown RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 TMEM120BA0PK00 339 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 DUOXA2Q1HG44 320 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 PIGOQ8TEQ8 1089 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 SYNJ2BP-COX16A0A087WUM0 186 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 NNMTP40261 264 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 RAD51Q06609 339 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 RWDD4Q6NW29 188 aaKnown RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 SFR1Q86XK3 245 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 PABPC3Q9H361 631 aaKnown RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 L2HGDHQ9H9P8 463 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 COX16Q9P0S2 106 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 ZC3H7BQ9UGR2 993 aaKnown RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 THRAP10827 490 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 SERPINB8P50452 374 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 LRRC49Q8IUZ0 686 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 TUFT1Q9NNX1 390 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 M0R2C6 588 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 PSTPIP1O43586 416 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 GUCA1CO95843 209 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 SCTRP47872 440 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 C16orf72Q14CZ0 275 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 EIF1ADQ8N9N8 165 aaKnown RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 MED14O60244 1454 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 IL6STP40189 918 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 IL12RB1P42701 662 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 DRAP1Q14919 205 aaPredicted RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 R3HDM1Q15032 1099 aaKnown RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 SRGAP2O75044 1071 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 NR1I3Q14994 352 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 NAB2Q15742 525 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 SPANXN2Q5MJ10 180 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 CCDC28BQ9BUN5 200 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 BDH2Q9BUT1 245 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 DDX47Q9H0S4 455 aaKnown RBP13.93□□□□□ -0.18
COL6A3-202ENST00000347401 NEU2Q9Y3R4 380 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 PCDHB6Q9Y5E3 794 aa13.93□□□□□ -0.18
COL6A3-202ENST00000347401 PDE4DIPQ5VU43 2346 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 NBPF26B4DH59 902 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 CBFA2T3O75081 653 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 BTDP43251 543 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 GEMIN4P57678 1058 aaKnown RBP13.92□□□□□ -0.18
COL6A3-202ENST00000347401 TUBA4AP68366 448 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 ZNF544Q6NX49 715 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 YTHDF3Q7Z739 585 aaKnown RBP13.92□□□□□ -0.18
COL6A3-202ENST00000347401 NBPF15Q8N660 670 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 ILKAPQ9H0C8 392 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-202ENST00000347401 PNMA3Q9UL41 463 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 POU5F1BQ06416 359 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 KIF22Q14807 665 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 PPP2R3CQ969Q6 453 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 RSAD1Q9HA92 442 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 CLIC2O15247 247 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 HUS1O60921 280 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 RAD23AP54725 363 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 PDAP1Q13442 181 aaKnown RBP13.92□□□□□ -0.18
COL6A3-202ENST00000347401 FAM83EQ2M2I3 478 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 KRT27Q7Z3Y8 459 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 SGMS1Q86VZ5 419 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 SCUBE1Q8IWY4 988 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 NXF1Q9UBU9 619 aaKnown RBP13.92□□□□□ -0.18
COL6A3-202ENST00000347401 C3orf70A6NLC5 250 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-202ENST00000347401 PRELPP51888 382 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 COASYQ13057 564 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 PDXDC2PQ6P474 469 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 KCNV1Q6PIU1 500 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 TMEM270Q6UE05 265 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 CRELD2Q6UXH1 353 aaPredicted RBP13.92□□□□□ -0.18
COL6A3-202ENST00000347401 FAM45AQ8TCE6 357 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 KLHL25Q9H0H3 589 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 ARHGEF3Q9NR81 526 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 RABGEF1Q9UJ41 708 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 BCORL1Q5H9F3 1711 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 CES2O00748 559 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 TSC22D1Q15714 1073 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 CDC26Q8NHZ8 85 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 HDAC6Q9UBN7 1215 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 KCNA2P16389 499 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 TGFBR2P37173 567 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 EFNA5P52803 228 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 KCNK10P57789 538 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 TCP10Q12799 353 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 ATAD3BQ5T9A4 648 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 BBS2Q9BXC9 721 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 PIGUQ9H490 435 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 ERAP1Q9NZ08 941 aa13.92□□□□□ -0.18
COL6A3-202ENST00000347401 ZBTB5O15062 677 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 MTRF1O75570 445 aaKnown RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 BCL10O95999 233 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 MRPL4Q9BYD3 311 aaKnown RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 AP5M1Q9H0R1 490 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 THRAP3Q9Y2W1 955 aaKnown RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 MUTP22033 750 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 GNL1P36915 607 aaPredicted RBP13.91□□□□□ -0.18
COL6A3-202ENST00000347401 C11orf88Q6PI97 169 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 SCFD2Q8WU76 684 aa13.91□□□□□ -0.18
COL6A3-202ENST00000347401 EGFL8Q99944 293 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms