RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 ERCC5P28715 1186 aaPredicted RBP12.8□□□□□ -0.36
SNCA-202ENST00000345009 LRPAP1P30533 357 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 PBX3P40426 434 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 PNPLA4P41247 253 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 SPAG1Q07617 926 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 UPP1Q16831 310 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 ZCWPW2Q504Y3 356 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 TMC7Q7Z402 723 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 FAM186BQ8IYM0 893 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 CSGALNACT2Q8N6G5 542 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 SPPL3Q8TCT6 385 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 POF1BQ8WVV4 589 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 C18orf25Q96B23 403 aaPredicted RBP12.8□□□□□ -0.36
SNCA-202ENST00000345009 NAT10Q9H0A0 1025 aaKnown RBP12.8□□□□□ -0.36
SNCA-202ENST00000345009 METTL14Q9HCE5 456 aaKnown RBP12.8□□□□□ -0.36
SNCA-202ENST00000345009 TLR9Q9NR96 1032 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 HCSTQ9UBK5 93 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 RWDD2AQ9UIY3 292 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 CTNND2Q9UQB3 1225 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 SF3B1O75533 1304 aaKnown RBP eCLIP12.8□□□□□ -0.363e-6■■■■■ 137.9
SNCA-202ENST00000345009 GBF1Q92538 1859 aa12.8□□□□□ -0.36
SNCA-202ENST00000345009 TMEM189-UBE2V1I3L0A0 370 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 NFICP08651 508 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 POU3F3P20264 500 aaPredicted RBP12.79□□□□□ -0.36
SNCA-202ENST00000345009 CLCNKBP51801 687 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 VAMP7P51809 220 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 RBP5P82980 135 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 NAB2Q15742 525 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 STX1AQ16623 288 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 USP41Q3LFD5 358 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 DMRTA1Q5VZB9 504 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 PDXDC1Q6P996 788 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 Q7L0L9 218 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 FILIP1Q7Z7B0 1213 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 VPS52Q8N1B4 723 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 ZSWIM2Q8NEG5 633 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 GDPD5Q8WTR4 605 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 MRPL38Q96DV4 380 aaKnown RBP12.79□□□□□ -0.36
SNCA-202ENST00000345009 CDX2Q99626 313 aaPredicted RBP12.79□□□□□ -0.36
SNCA-202ENST00000345009 EPAS1Q99814 870 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 CXCL16Q9H2A7 254 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 ENTPD7Q9NQZ7 604 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 INTS13Q9NVM9 706 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 MTMR10Q9NXD2 777 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 TMEM63CQ9P1W3 806 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 ARMCX3Q9UH62 379 aaPredicted RBP12.79□□□□□ -0.36
SNCA-202ENST00000345009 ITGA11Q9UKX5 1188 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 ARIH1Q9Y4X5 557 aaPredicted RBP12.79□□□□□ -0.36
SNCA-202ENST00000345009 TRIP11Q15643 1979 aa12.79□□□□□ -0.36
SNCA-202ENST00000345009 TDRD15B5MCY1 1934 aaKnown RBP12.78□□□□□ -0.36
SNCA-202ENST00000345009 FSD2A1L4K1 749 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 RFXAPO00287 272 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 GRM6O15303 877 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 MEFVO15553 781 aaPredicted RBP12.78□□□□□ -0.36
SNCA-202ENST00000345009 PHACTR2O75167 634 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 AKAP3O75969 853 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 CCDC192P0DO97 292 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 FOSL2P15408 326 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 CASP4P49662 377 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 CREMQ03060 361 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 SOX4Q06945 474 aaPredicted RBP12.78□□□□□ -0.36
SNCA-202ENST00000345009 MYO1EQ12965 1108 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 TRPC3Q13507 836 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 CCDC40Q4G0X9 1142 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 TIGD5Q53EQ6 642 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 TTI2Q6NXR4 508 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 SPRED2Q7Z698 418 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 FRMD5Q7Z6J6 570 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 FAM114A1Q8IWE2 563 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 GPR65Q8IYL9 337 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 APPL2Q8NEU8 664 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 PARD3BQ8TEW8 1205 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 ZNF560Q96MR9 790 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 CGRRF1Q99675 332 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 GOLGA2P5Q9HBQ8 144 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 MRPL17Q9NRX2 175 aaKnown RBP12.78□□□□□ -0.36
SNCA-202ENST00000345009 TUBGCP4Q9UGJ1 667 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 SZT2Q5T011 3432 aa12.78□□□□□ -0.36
SNCA-202ENST00000345009 MYO7AQ13402 2215 aa12.77□□□□□ -0.36
SNCA-202ENST00000345009 RALGAPA2Q2PPJ7 1873 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 TRIM49BA6NDI0 452 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 EPOPA6NHQ4 379 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 NCK2O43639 380 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 B4GALT3O60512 393 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 KIF4AO95239 1232 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 CXCL14O95715 111 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 SOD2P04179 222 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 URODP06132 367 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 KRT19P08727 400 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 GTF2H1P32780 548 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 CA8P35219 290 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 PMS1P54277 932 aaKnown RBP12.77□□□□□ -0.37
SNCA-202ENST00000345009 STX17P56962 302 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 CLDN10P78369 228 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 SMC1AQ14683 1233 aaKnown RBP12.77□□□□□ -0.37
SNCA-202ENST00000345009 NFKBIBQ15653 356 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 DPCR1Q3MIW9 517 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 C9orf57Q5W0N0 161 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 FUT10Q6P4F1 479 aa12.77□□□□□ -0.37
SNCA-202ENST00000345009 DSTYKQ6XUX3 929 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms