RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 GABPB1Q06547 395 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 DHX34Q14147 1143 aaKnown RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 ITPRIPL1Q6GPH6 555 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF280DQ6N043 979 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RAD9BQ6WBX8 426 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 NUDT18Q6ZVK8 323 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 OSMRQ99650 979 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 DDX50Q9BQ39 737 aaKnown RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 FAM129AQ9BZQ8 928 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 KLC2Q9H0B6 622 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 AVENQ9NQS1 362 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PRG3Q9Y2Y8 225 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 VIRMAQ69YN4 1812 aaKnown RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 FARP2O94887 1054 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 CCNE2O96020 404 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 CD44P16070 742 aaKnown RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 ALDH7A1P49419 539 aaKnown RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 KPNA2P52292 529 aaKnown RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 GHRHRQ02643 423 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 C1QBPQ07021 282 aaKnown RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 NR1H3Q13133 447 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 ARID5BQ14865 1188 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 AFAP1L2Q8N4X5 818 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PPTC7Q8NI37 304 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 AFAP1L1Q8TED9 768 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PPP1R2P1Q96PQ5 205 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RNPEPQ9H4A4 650 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 VPS37BQ9H9H4 285 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RSAD1Q9HA92 442 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RIPK3Q9Y572 518 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 ALG6Q9Y672 507 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 H3BRJ5 948 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 EFCAB14O75071 495 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 KRT37O76014 449 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 FAM200BP0CF97 657 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 GRK4P32298 578 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PRPSAP1Q14558 356 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 MFSD10Q14728 455 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 C4orf22Q6V702 233 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 GSDMBQ8TAX9 411 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 TRIM7Q9C029 511 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PPCSQ9HAB8 311 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 TRPV2Q9Y5S1 764 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 PRKAR2AP13861 404 aaKnown RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 KCNA2P16389 499 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 SETDB1Q15047 1291 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 LMBRD2Q68DH5 695 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 NFRKBQ6P4R8 1299 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 HSFY1Q96LI6 401 aa7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RGS17Q9UGC6 210 aaPredicted RBP7.27□□□□□ -1.25
SF3B1-201ENST00000335508 RGPD1P0DJD0 1748 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 SMIM35A0A1B0GVV1 85 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 ZNF862O60290 1169 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 STIP1P31948 543 aaKnown RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 PPARGP37231 505 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 EVX2Q03828 476 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 KRT17Q04695 432 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 SNX17Q15036 470 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CXCL17Q6UXB2 119 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 ARHGEF18Q6ZSZ5 1173 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 SIAH1Q8IUQ4 282 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 ARHGAP18Q8N392 663 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CFAP57Q96MR6 1250 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 KRT12Q99456 494 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 NAT9Q9BTE0 207 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 MAGEB5Q9BZ81 275 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 TTLL3Q9Y4R7 772 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 MYCP01106 439 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 XPAP23025 273 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 GLRA2P23416 452 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 NNMTP40261 264 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 BCAT1P54687 386 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 RFX6Q8HWS3 928 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CDKL3Q8IVW4 592 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 KCTD6Q8NC69 237 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 SPATA4Q8NEY3 305 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CLEC4DQ8WXI8 215 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 RNPC3Q96LT9 517 aaKnown RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 SMC6Q96SB8 1091 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 TSPYL2Q9H2G4 693 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CHST12Q9NRB3 414 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 NDUFAB1O14561 156 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 RNF40O75150 1001 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 PALMO75781 387 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 GNL1P36915 607 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 ETFBP38117 255 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 PLTPP55058 493 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 MDM2Q00987 491 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 DR1Q01658 176 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CENPUQ71F23 418 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 RPUSD2Q8IZ73 545 aaKnown RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 TMEM86AQ8N2M4 240 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 ATL2Q8NHH9 583 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 TMEM117Q9H0C3 514 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 A0A0A6YYK5 440 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 NPHP3-ACAD11A0A0J9YXS1 232 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 HIRAP54198 1017 aaPredicted RBP7.26□□□□□ -1.25
SF3B1-201ENST00000335508 MEA1Q16626 185 aa7.26□□□□□ -1.25
SF3B1-201ENST00000335508 CC2D1AQ6P1N0 951 aaPredicted RBP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms