RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 ELMSAN1Q6PJG2 1045 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 ANKS3Q6ZW76 656 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 C12orf56Q8IXR9 622 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 XXYLT1Q8NBI6 393 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 KIAA0895Q8NCT3 520 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 C3orf58Q8NDZ4 430 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 ZSWIM2Q8NEG5 633 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 VN1R2Q8NFZ6 395 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 LNX1Q8TBB1 728 aaPredicted RBP15.18■□□□□ 0.02
LIMS1-201ENST00000332345 SLC22A17Q8WUG5 538 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 GSDMAQ96QA5 445 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 GTPBP4Q9BZE4 634 aaKnown RBP15.18■□□□□ 0.02
LIMS1-201ENST00000332345 DZANK1Q9NVP4 752 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 DPP3Q9NY33 737 aa15.18■□□□□ 0.02
LIMS1-201ENST00000332345 PDXKO00764 312 aa15.17■□□□□ 0.02
LIMS1-201ENST00000332345 SYN3O14994 580 aa15.17■□□□□ 0.02
LIMS1-201ENST00000332345 GADD45BO75293 160 aaPredicted RBP15.17■□□□□ 0.02
LIMS1-201ENST00000332345 CYP2J2P51589 502 aa15.17■□□□□ 0.02
LIMS1-201ENST00000332345 RBM10P98175 930 aaKnown RBP15.17■□□□□ 0.02
LIMS1-201ENST00000332345 TFAMQ00059 246 aaKnown RBP15.17■□□□□ 0.02
LIMS1-201ENST00000332345 SMAD4Q13485 552 aaKnown RBP15.17■□□□□ 0.02
LIMS1-201ENST00000332345 PSMD5Q16401 504 aa15.17■□□□□ 0.02
LIMS1-201ENST00000332345 PRSS55Q6UWB4 352 aaPredicted RBP15.17■□□□□ 0.02
LIMS1-201ENST00000332345 RDH13Q8NBN7 331 aa15.17■□□□□ 0.02
LIMS1-201ENST00000332345 APPL2Q8NEU8 664 aa15.17■□□□□ 0.02
LIMS1-201ENST00000332345 SUSD3Q96L08 255 aa15.17■□□□□ 0.02
LIMS1-201ENST00000332345 FBXL18Q96ME1 805 aa15.17■□□□□ 0.02
LIMS1-201ENST00000332345 VCANP13611 3396 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 ANO9A1A5B4 782 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 ARHGEF37A1IGU5 675 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 SPDYE4A6NLX3 237 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 H7C4K7 107 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 I3L4J1 428 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 PIRO00625 290 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 MBTPS2O43462 519 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 CALUO43852 315 aaPredicted RBP15.16■□□□□ 0.02
LIMS1-201ENST00000332345 PRPF40AO75400 957 aaKnown RBP15.16■□□□□ 0.02
LIMS1-201ENST00000332345 GLUD1P00367 558 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 EPCAMP16422 314 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 TKTP29401 623 aaKnown RBP15.16■□□□□ 0.02
LIMS1-201ENST00000332345 GUCY2FP51841 1108 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 LILRA4P59901 499 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 ITIH3Q06033 890 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 SNRNP35Q16560 246 aaKnown RBP15.16■□□□□ 0.02
LIMS1-201ENST00000332345 C9orf57Q5W0N0 161 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 CES5AQ6NT32 575 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 DSTYKQ6XUX3 929 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 PALB2Q86YC2 1186 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 CBWD2Q8IUF1 395 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 GUF1Q8N442 669 aaKnown RBP15.16■□□□□ 0.02
LIMS1-201ENST00000332345 SMRP1Q8NCR6 262 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 HDAC7Q8WUI4 952 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 TMEM174Q8WUU8 243 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 SMARCE1Q969G3 411 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 CLSTN3Q9BQT9 956 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 KCTD10Q9H3F6 313 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 PDE11AQ9HCR9 933 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 PCDHB8Q9UN66 801 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 R3HCC1Q9Y3T6 440 aaKnown RBP15.16■□□□□ 0.02
LIMS1-201ENST00000332345 BACE2Q9Y5Z0 518 aa15.16■□□□□ 0.02
LIMS1-201ENST00000332345 VWA8A3KMH1 1905 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 MTCL1Q9Y4B5 1905 aaKnown RBP15.15■□□□□ 0.02
LIMS1-201ENST00000332345 M0QZQ0 153 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 EXOC3O60645 756 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 RPL17P18621 184 aaKnown RBP15.15■□□□□ 0.02
LIMS1-201ENST00000332345 MYBPC2Q14324 1141 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 SMAD2Q15796 467 aaKnown RBP15.15■□□□□ 0.02
LIMS1-201ENST00000332345 DUOXA2Q1HG44 320 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 VARS2Q5ST30 1063 aaKnown RBP15.15■□□□□ 0.02
LIMS1-201ENST00000332345 SYCE2Q6PIF2 218 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 SLC9A9Q8IVB4 645 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 GLYCTKQ8IVS8 523 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 EFCAB13Q8IY85 973 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 SPATA20Q8TB22 786 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 ADAMTS19Q8TE59 1207 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 ANKRD36BP1Q96IX9 119 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 FNBP1Q96RU3 617 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 S1PR5Q9H228 398 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 ADAM7Q9H2U9 754 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 PLEKHA4Q9H4M7 779 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 MTRRQ9UBK8 725 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 PCDHA5Q9Y5H7 936 aa15.15■□□□□ 0.02
LIMS1-201ENST00000332345 TGM5O43548 720 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 TNNC2P02585 160 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 TMEM191BP0C7N4 346 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 OR1D2P34982 312 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 PNPLA4P41247 253 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 AARSP49588 968 aaKnown RBP eCLIP15.14■□□□□ 0.01
LIMS1-201ENST00000332345 TAF6P49848 677 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 MRPL58Q14197 206 aaKnown RBP15.14■□□□□ 0.01
LIMS1-201ENST00000332345 ZNF658Q5TYW1 1059 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-201ENST00000332345 LILRA6Q6PI73 481 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 CLEC17AQ6ZS10 378 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 USP37Q86T82 979 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 CSGALNACT2Q8N6G5 542 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 MFSD14AQ96MC6 490 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 OXCT2Q9BYC2 517 aaPredicted RBP15.14■□□□□ 0.01
LIMS1-201ENST00000332345 TSHZ2Q9NRE2 1034 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 INTS13Q9NVM9 706 aa15.14■□□□□ 0.01
LIMS1-201ENST00000332345 DMAC2Q9NW81 257 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms