RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 KRT79Q5XKE5 535 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 RNF43Q68DV7 783 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 CYP4F22Q6NT55 531 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 ARMC9Q7Z3E5 817 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 MCOLN2Q8IZK6 566 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 C2orf69Q8N8R5 385 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 SLC43A3Q8NBI5 491 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 DHX38Q92620 1227 aaKnown RBP8.4□□□□□ -1.06
CNOT4-201ENST00000315544 TMEM237Q96Q45 408 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 DCLK3Q9C098 648 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 ZNF287Q9HBT7 754 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 SLC40A1Q9NP59 571 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 PNPLA8Q9NP80 782 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 GPCPD1Q9NPB8 672 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 CHST7Q9NS84 486 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 LNPEPQ9UIQ6 1025 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 PCDHGC3Q9UN70 934 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 GMNCA6NCL1 334 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 ANKRD33BA6NCL7 494 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 MSCO60682 206 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 ASPAP45381 313 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 FAM110CQ1W6H9 321 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 MSS51Q4VC12 460 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 ZNF771Q7L3S4 317 aaPredicted RBP8.4□□□□□ -1.06
CNOT4-201ENST00000315544 FAM76AQ8TAV0 307 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 NKD2Q969F2 451 aaPredicted RBP8.4□□□□□ -1.06
CNOT4-201ENST00000315544 CRACR2AQ9BSW2 395 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 DDX23Q9BUQ8 820 aaKnown RBP8.4□□□□□ -1.06
CNOT4-201ENST00000315544 RSPH14Q9UHP6 348 aa8.4□□□□□ -1.06
CNOT4-201ENST00000315544 TRIP12Q14669 1992 aaPredicted RBP8.4□□□□□ -1.06
CNOT4-201ENST00000315544 SPATA31C2B4DYI2 1134 aa8.4□□□□□ -1.07
CNOT4-201ENST00000315544 BACE1P56817 501 aa8.4□□□□□ -1.07
CNOT4-201ENST00000315544 GNGT1P63211 74 aa8.4□□□□□ -1.07
CNOT4-201ENST00000315544 PAK2Q13177 524 aa8.4□□□□□ -1.07
CNOT4-201ENST00000315544 PABPC4Q13310 644 aaKnown RBP eCLIP8.4□□□□□ -1.07
CNOT4-201ENST00000315544 MAMLD1Q13495 774 aa8.4□□□□□ -1.07
CNOT4-201ENST00000315544 LLGL2Q6P1M3 1020 aa8.4□□□□□ -1.07
CNOT4-201ENST00000315544 AP1M1Q9BXS5 423 aa8.4□□□□□ -1.07
CNOT4-201ENST00000315544 GJA3Q9Y6H8 435 aa8.4□□□□□ -1.07
CNOT4-201ENST00000315544 NRDCO43847 1150 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 DNAJC6O75061 913 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 COMTP21964 271 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 PSMD6Q15008 389 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 MOB2Q70IA6 237 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 CCDC65Q8IXS2 484 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 IPO4Q8TEX9 1081 aaKnown RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 DCAKDQ8WVC6 231 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 PXMP2Q9NR77 195 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 DDX43Q9NXZ2 648 aaKnown RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 TMEM191CA6NGB0 347 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 LGR5O75473 907 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 TMEM191BP0C7N4 346 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 PSMC2P35998 433 aaKnown RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 CCNFP41002 786 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 YARSP54577 528 aaKnown RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 AKAP17AQ02040 695 aaKnown RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 DNAJC21Q5F1R6 531 aaKnown RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 ZBTB41Q5SVQ8 909 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 ACAD10Q6JQN1 1059 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 C8orf74Q6P047 294 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 ECHDC2Q86YB7 292 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 SULF1Q8IWU6 871 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 P3H4Q92791 437 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 SKA1Q96BD8 255 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 ZNF778Q96MU6 729 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 LXNQ9BS40 222 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 ROPN1BQ9BZX4 212 aaPredicted RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 ROPN1Q9HAT0 212 aaPredicted RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 ARMCX3Q9UH62 379 aaPredicted RBP8.39□□□□□ -1.07
CNOT4-201ENST00000315544 TBX20Q9UMR3 447 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 MMP8P22894 467 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 ASIC2Q16515 512 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 MDM1Q8TC05 714 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 PIGOQ8TEQ8 1089 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 NRG4Q8WWG1 115 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 STON2Q8WXE9 905 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 PPM1EQ8WY54 764 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 LPAR1Q92633 364 aa8.39□□□□□ -1.07
CNOT4-201ENST00000315544 TRIM49P0CI25 452 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 TRIM49CP0CI26 452 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 BMP3P12645 472 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 RRM1P23921 792 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 HOXA13P31271 388 aaPredicted RBP8.38□□□□□ -1.07
CNOT4-201ENST00000315544 MTIF2P46199 727 aaKnown RBP8.38□□□□□ -1.07
CNOT4-201ENST00000315544 KLHL30Q0D2K2 578 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 SLC29A2Q14542 456 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 MAP9Q49MG5 647 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 CERKLQ49MI3 558 aaPredicted RBP8.38□□□□□ -1.07
CNOT4-201ENST00000315544 PHC3Q8NDX5 983 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 RDM1Q8NG50 284 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 NCSTNQ92542 709 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 VCPIP1Q96JH7 1222 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 PARVGQ9HBI0 331 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 ANKEF1Q9NU02 776 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 HSPBP1Q9NZL4 362 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 RBPJLQ9UBG7 517 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 RABGAP1Q9Y3P9 1069 aa8.38□□□□□ -1.07
CNOT4-201ENST00000315544 WISP3O95389 354 aaPredicted RBP8.38□□□□□ -1.07
CNOT4-201ENST00000315544 ALOX15P16050 662 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms