RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 NR1H3Q13133 447 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 GOLGA7BQ2TAP0 167 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 KIAA1755Q5JYT7 1200 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 SDE2Q6IQ49 451 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 ZNF564Q8TBZ8 553 aaPredicted RBP9.82□□□□□ -0.84
PTPRE-202ENST00000306042 TTC25Q96NG3 672 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 AGPAT1Q99943 283 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 NUP85Q9BW27 656 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 C11orf49Q9H6J7 331 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 MOSPD1Q9UJG1 213 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 ST3GAL5Q9UNP4 418 aa9.82□□□□□ -0.84
PTPRE-202ENST00000306042 PHF20L1A8MW92 1017 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 VIMP08670 466 aaKnown RBP9.81□□□□□ -0.84
PTPRE-202ENST00000306042 SNX1Q13596 522 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 ITIH5Q86UX2 942 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 MTMR9Q96QG7 549 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 PLEKHA5Q9HAU0 1116 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 HOMER3Q9NSC5 361 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 TRPM5Q9NZQ8 1165 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 ITGA11Q9UKX5 1188 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 PTPN22Q9Y2R2 807 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 PTCH2Q9Y6C5 1203 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 H3BRJ5 948 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 SRGAP2O75044 1071 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 GJB1P08034 283 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 ACO1P21399 889 aaKnown RBP9.81□□□□□ -0.84
PTPRE-202ENST00000306042 PHBP35232 272 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 AVPR1AP37288 418 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 CFAP157Q5JU67 520 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 C17orf53Q8N3J3 647 aaPredicted RBP9.81□□□□□ -0.84
PTPRE-202ENST00000306042 PPP1R11O60927 126 aaPredicted RBP9.81□□□□□ -0.84
PTPRE-202ENST00000306042 XYLBO75191 536 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 RECQL4O94761 1208 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 UCHL3P15374 230 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 PDGFRAP16234 1089 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 ALDH3A1P30838 453 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 TRAPPC11Q7Z392 1133 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 ATP2A3Q93084 1043 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 FBXO32Q969P5 355 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 HINFPQ9BQA5 517 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 MFSD1Q9H3U5 465 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 ABHD10Q9NUJ1 306 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 EVA1BQ9NVM1 165 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 NKIRAS1Q9NYS0 192 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 HEY1Q9Y5J3 304 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 PKD1L3Q7Z443 1732 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 SMIM35A0A1B0GVV1 85 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 TEX33O43247 280 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 TJP3O95049 919 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 CA4P22748 312 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 BASP1P80723 227 aaKnown RBP9.81□□□□□ -0.84
PTPRE-202ENST00000306042 WHAMMP3Q1A5X7 153 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 LDLRAD1Q5T700 205 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 UBA3Q8TBC4 463 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 TMC2Q8TDI7 906 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 PARD3BQ8TEW8 1205 aa9.81□□□□□ -0.84
PTPRE-202ENST00000306042 RNPC3Q96LT9 517 aaKnown RBP9.81□□□□□ -0.84
PTPRE-202ENST00000306042 UBE2OQ9C0C9 1292 aaKnown RBP9.81□□□□□ -0.84
PTPRE-202ENST00000306042 KLHL8Q9P2G9 620 aaPredicted RBP9.81□□□□□ -0.84
PTPRE-202ENST00000306042 COL1A1P02452 1464 aaPredicted RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 TTC26A0AVF1 554 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 SH3BP5O60239 455 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 COL1A2P08123 1366 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 ATICP31939 592 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 ITGB3BPQ13352 177 aaPredicted RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 CUL2Q13617 745 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 SEPT6Q14141 434 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 RRP1BQ14684 758 aaKnown RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 UMODL1Q5DID0 1318 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 CES5AQ6NT32 575 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 LRRC8DQ7L1W4 858 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 OTOP2Q7RTS6 562 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 ACOT1Q86TX2 421 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 GAS2L3Q86XJ1 694 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 KIAA0319LQ8IZA0 1049 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 RAB3IL1Q8TBN0 382 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 CLEC4DQ8WXI8 215 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 CDKL2Q92772 493 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 HAS1Q92839 578 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 PNMA5Q96PV4 448 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 MRPL17Q9NRX2 175 aaKnown RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 LIMA1Q9UHB6 759 aaKnown RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 RWDD3Q9Y3V2 267 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 PGRMC1O00264 195 aaKnown RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 MYL4P12829 197 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 GTF2H1P32780 548 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 PPM1AP35813 382 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 SCNN1GP51170 649 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 ACLYP53396 1101 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 CYP24A1Q07973 514 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 TSTA3Q13630 321 aaPredicted RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 TMEM119Q4V9L6 283 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 NOMO2Q5JPE7 1267 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 EFHC1Q5JVL4 640 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 GPAT2Q6NUI2 795 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 ELOA2Q8IYF1 753 aaPredicted RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 TSC1Q92574 1164 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 P3H4Q92791 437 aa9.8□□□□□ -0.84
PTPRE-202ENST00000306042 CALR3Q96L12 384 aaKnown RBP9.8□□□□□ -0.84
PTPRE-202ENST00000306042 TRPV6Q9H1D0 765 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms