RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 NKX1-1Q15270 411 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 OR6B2Q6IFH4 312 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 SYDE1Q6ZW31 735 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 CCT8L2Q96SF2 557 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ARHGAP23Q9P227 1491 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ZNF335Q9H4Z2 1342 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 CAMTA2O94983 1202 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 DBNDD1Q9H9R9 158 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 KIAA1586Q9HCI6 787 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 HSPBP1Q9NZL4 362 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 KCNA2P16389 499 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 MDH1P40925 334 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 CTCFP49711 727 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 WASHC5Q12768 1159 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 QRICH1Q2TAL8 776 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 AGBL2Q5U5Z8 902 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 IYDQ6PHW0 289 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 C7orf31Q8N865 590 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 SIKE1Q9BRV8 207 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 LXNQ9BS40 222 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 DLGAP2Q9P1A6 1054 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 USP15Q9Y4E8 981 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 C5orf58C9J3I9 102 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 BRAFP15056 766 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ATP6V1B1P15313 513 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 HEMGNQ9BXL5 484 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 CASS4Q9NQ75 786 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 MAD2L2Q9UI95 211 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 NTSR2O95665 410 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 CRKP46108 304 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 PDIA2Q13087 525 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 PRKG1Q13976 671 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 TRIP4Q15650 581 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 KLHL31Q9H511 634 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 USP49Q70CQ1 688 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ERICH1Q86X53 443 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 MSTO1Q9BUK6 570 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 TBC1D22BQ9NU19 505 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ASAP2O43150 1006 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 PPP1R37O75864 691 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 CIITAP33076 1130 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 TOB1P50616 345 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 SMAD1Q15797 465 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ZBTB10Q96DT7 871 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 CD209Q9NNX6 404 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ALG13Q9NP73 1137 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 NGRNQ9NPE2 291 aaKnown RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 SLC8A2Q9UPR5 921 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ARIH1Q9Y4X5 557 aaPredicted RBP10.36□□□□□ -0.75
COL6A3-201ENST00000295550 MYO3BQ8WXR4 1341 aa10.36□□□□□ -0.75
COL6A3-201ENST00000295550 ABCE1P61221 599 aaKnown RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 STK4Q13043 487 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 C3orf20Q8ND61 904 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 FAM129AQ9BZQ8 928 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 SENP1Q9P0U3 644 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 AGTP01019 485 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 SFNP31947 248 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 STAT3P40763 770 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 Q3C1V9 767 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 DNAL1Q4LDG9 190 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ZBTB33Q86T24 672 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ATXN7L3BQ96GX2 97 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 EGFL8Q99944 293 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TSSK1BQ9BXA7 367 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 STK33Q9BYT3 514 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 CCDC134Q9H6E4 229 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 DONSONQ9NYP3 566 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 AP4S1Q9Y587 144 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 VAMP7P51809 220 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TRPM8Q7Z2W7 1104 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 MCPH1Q8NEM0 835 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 EIF2AK1Q9BQI3 630 aaKnown RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 IGF2BP3O00425 579 aaKnown RBP eCLIP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 EYA4O95677 639 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 PSMC6P62333 389 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 CLEC4FQ8N1N0 589 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TMEM161AQ9NX61 479 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ZBTB22O15209 634 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TBXAS1P24557 533 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ST13P50502 369 aaKnown RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TRIM71Q2Q1W2 868 aaKnown RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 NDUFAF2Q8N183 169 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 SOX13Q9UN79 622 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TBX3O15119 743 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 CAPN1P07384 714 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TCF3P15923 654 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 MTMR1Q13613 665 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TRIP10Q15642 601 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ARHGAP17Q68EM7 881 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 APLFQ8IW19 511 aaPredicted RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 TERB1Q8NA31 727 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 GANCQ8TET4 914 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 CNOT8Q9UFF9 292 aaKnown RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 PHF2O75151 1096 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 PDE5AO76074 875 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 GH2P01242 217 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 STXBP2Q15833 593 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 CCDC137Q6PK04 289 aaKnown RBP10.35□□□□□ -0.75
COL6A3-201ENST00000295550 ENOSF1Q7L5Y1 443 aa10.35□□□□□ -0.75
COL6A3-201ENST00000295550 GLYCTKQ8IVS8 523 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms