RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 CDY1Q9Y6F8 540 aa11.32□□□□□ -0.6
VPS50-201ENST00000251739 SPTBN2O15020 2390 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 ARHGEF37A1IGU5 675 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 E9PMD0 336 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 K7ERI5 159 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 LAD1O00515 517 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 CCL16O15467 120 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 HIP1RO75146 1068 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 ABLIM3O94929 683 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 MCF2P10911 925 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 GLULP15104 373 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 BRCC3P46736 316 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 STARD6P59095 220 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 ZNF568Q3ZCX4 644 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 HYIQ5T013 277 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 RINT1Q6NUQ1 792 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 MTSS1LQ765P7 747 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 APBB1IPQ7Z5R6 666 aaPredicted RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 ST13P5Q8NFI4 369 aaPredicted RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 PJA1Q8NG27 643 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 NTPCRQ9BSD7 190 aaKnown RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 REPIN1Q9BWE0 567 aaKnown RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 MRPL4Q9BYD3 311 aaKnown RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 AVENQ9NQS1 362 aaPredicted RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 TOPORSQ9NS56 1045 aaPredicted RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 HCFC1R1Q9NWW0 138 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 CNTN3Q9P232 1028 aa11.31□□□□□ -0.6
VPS50-201ENST00000251739 DNMT3BQ9UBC3 853 aaKnown RBP11.31□□□□□ -0.6
VPS50-201ENST00000251739 I3L4J1 428 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 TRAPPC3O43617 180 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 GUCY2CP25092 1073 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 PEX3P56589 373 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 GPC5P78333 572 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 ROR1Q01973 937 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 DMP1Q13316 513 aaPredicted RBP11.3□□□□□ -0.6
VPS50-201ENST00000251739 MRPL58Q14197 206 aaKnown RBP11.3□□□□□ -0.6
VPS50-201ENST00000251739 SLC5A9Q2M3M2 681 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 PABPC1LQ4VXU2 614 aaKnown RBP11.3□□□□□ -0.6
VPS50-201ENST00000251739 ANKS3Q6ZW76 656 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 ZNF461Q8TAF7 563 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 KCNN1Q92952 543 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 DRC1Q96MC2 740 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 CCDC94Q9BW85 323 aaPredicted RBP11.3□□□□□ -0.6
VPS50-201ENST00000251739 TARS2Q9BW92 718 aaKnown RBP11.3□□□□□ -0.6
VPS50-201ENST00000251739 RAB34Q9BZG1 259 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 FOXQ1Q9C009 403 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 C17orf75Q9HAS0 396 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 SLC38A7Q9NVC3 462 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 RBM19Q9Y4C8 960 aaKnown RBP11.3□□□□□ -0.6
VPS50-201ENST00000251739 TICRRQ7Z2Z1 1910 aa11.3□□□□□ -0.6
VPS50-201ENST00000251739 WDR27A2RRH5 827 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 CCDC169A6NNP5 214 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 PODXLO00592 558 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 SYN3O14994 580 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 DCNP07585 359 aaKnown RBP11.29□□□□□ -0.6
VPS50-201ENST00000251739 CDC25AP30304 524 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 ATP2C1P98194 919 aaPredicted RBP11.29□□□□□ -0.6
VPS50-201ENST00000251739 GNL2Q13823 731 aaKnown RBP11.29□□□□□ -0.6
VPS50-201ENST00000251739 MLF2Q15773 248 aaPredicted RBP11.29□□□□□ -0.6
VPS50-201ENST00000251739 C8orf34Q49A92 452 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 KRT79Q5XKE5 535 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 MPZL3Q6UWV2 235 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 PARP9Q8IXQ6 854 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 TCEAL8Q8IYN2 117 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 MAML2Q8IZL2 1156 aaPredicted RBP11.29□□□□□ -0.6
VPS50-201ENST00000251739 ADSSL1Q8N142 457 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 FAM184AQ8NB25 1140 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 TMEM161BQ8NDZ6 487 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 SPIRE2Q8WWL2 714 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 PNMA5Q96PV4 448 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 TIPINQ9BVW5 301 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 SEMA4AQ9H3S1 761 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 GDE1Q9NZC3 331 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 TSR3Q9UJK0 312 aaKnown RBP11.29□□□□□ -0.6
VPS50-201ENST00000251739 DNM3Q9UQ16 869 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 SIT1Q9Y3P8 196 aa11.29□□□□□ -0.6
VPS50-201ENST00000251739 NUP210Q8TEM1 1887 aaPredicted RBP11.29□□□□□ -0.6
VPS50-201ENST00000251739 KIF26AQ9ULI4 1882 aaPredicted RBP11.29□□□□□ -0.6
VPS50-201ENST00000251739 SCN1AP35498 2009 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 KANSL1LA0AUZ9 987 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 SHISA7A6NL88 538 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 NRG2O14511 850 aaPredicted RBP11.28□□□□□ -0.6
VPS50-201ENST00000251739 LRRN2O75325 713 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 ECI2O75521 394 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 TOM1L1O75674 476 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 RHOP08100 348 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 MAPTP10636 758 aaKnown RBP11.28□□□□□ -0.6
VPS50-201ENST00000251739 ATF2P15336 505 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 FCARP24071 287 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 RPL9P32969 192 aaKnown RBP11.28□□□□□ -0.6
VPS50-201ENST00000251739 YARSP54577 528 aaKnown RBP11.28□□□□□ -0.6
VPS50-201ENST00000251739 OSTNP61366 133 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 PRKCQQ04759 706 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 NOLC1Q14978 699 aaKnown RBP eCLIP11.28□□□□□ -0.6
VPS50-201ENST00000251739 PRSS36Q5K4E3 855 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 C1orf210Q8IVY1 113 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 KCTD17Q8N5Z5 321 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 ING5Q8WYH8 240 aa11.28□□□□□ -0.6
VPS50-201ENST00000251739 C18orf25Q96B23 403 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms