RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 MTERF2Q49AM1 385 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 SWT1Q5T5J6 900 aaKnown RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 TDRD10Q5VZ19 366 aaKnown RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 IPO4Q8TEX9 1081 aaKnown RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 JDP2Q8WYK2 163 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 ARHGEF2Q92974 986 aaKnown RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 FAM84AQ96KN4 292 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 SLC40A1Q9NP59 571 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 ANAPC5Q9UJX4 755 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 CCT8L1PA6NM43 557 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 ACOT2P49753 483 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 POLGP54098 1239 aaPredicted RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 NLRP11P59045 1033 aaKnown RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 KLF1Q13351 362 aaPredicted RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 SPRED3Q2MJR0 410 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 CCDC38Q502W7 563 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 C2CD6Q53TS8 623 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 PPP1R2P3Q6NXS1 205 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 BBOF1Q8ND07 529 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 JPH2Q9BR39 696 aaPredicted RBP17.47■□□□□ 0.39
HOXD3-201ENST00000249440 AS3MTQ9HBK9 375 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 ADAM22Q9P0K1 906 aa17.47■□□□□ 0.39
HOXD3-201ENST00000249440 LDHAP00338 332 aaKnown RBP17.46■□□□□ 0.39
HOXD3-201ENST00000249440 RALAP11233 206 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 ACO1P21399 889 aaKnown RBP17.46■□□□□ 0.39
HOXD3-201ENST00000249440 CUL2Q13617 745 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 EMC2Q15006 297 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 TRIP13Q15645 432 aaPredicted RBP17.46■□□□□ 0.39
HOXD3-201ENST00000249440 CCNG2Q16589 344 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 SLFN12LQ6IEE8 588 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 ABRAQ8N0Z2 381 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 CCDC89Q8N998 374 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 REPS2Q8NFH8 660 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 HERPUD2Q9BSE4 406 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 SCINQ9Y6U3 715 aa17.46■□□□□ 0.39
HOXD3-201ENST00000249440 UMODL1Q5DID0 1318 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 THAP12O43422 761 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 SORBS3O60504 671 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 EGFRP00533 1210 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 GNA15P30679 374 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 IFNAR2P48551 515 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 ZNF280AP59817 542 aaPredicted RBP17.46■□□□□ 0.38
HOXD3-201ENST00000249440 SPOPLQ6IQ16 392 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 CHADLQ6NUI6 762 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 LLGL2Q6P1M3 1020 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 TMEM270Q6UE05 265 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 ZNF365Q70YC5 407 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 DYDC1Q8WWB3 177 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 KCNN1Q92952 543 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 C11orf70Q9BRQ4 267 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 HEMGNQ9BXL5 484 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 ZNF214Q9UL59 606 aaPredicted RBP17.46■□□□□ 0.38
HOXD3-201ENST00000249440 TELO2Q9Y4R8 837 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 PCDHB4Q9Y5E5 795 aa17.46■□□□□ 0.38
HOXD3-201ENST00000249440 DOCK1Q14185 1865 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 NOMO3P69849 1222 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 MAMLD1Q13495 774 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 KYNUQ16719 465 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 KATNAL2Q8IYT4 538 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 ZNF280CQ8ND82 737 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 ELAC2Q9BQ52 826 aaKnown RBP17.45■□□□□ 0.38
HOXD3-201ENST00000249440 OSBPL8Q9BZF1 889 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 RBAKQ9NYW8 714 aaPredicted RBP17.45■□□□□ 0.38
HOXD3-201ENST00000249440 R3HDM2Q9Y2K5 976 aaKnown RBP17.45■□□□□ 0.38
HOXD3-201ENST00000249440 RLFQ13129 1914 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 PHIPQ8WWQ0 1821 aa17.45■□□□□ 0.38
HOXD3-201ENST00000249440 SPATA31C2B4DYI2 1134 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 K7ERI5 159 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 ATP2C2O75185 946 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 TCEA3O75764 348 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 VNN1O95497 513 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 SUPT20HL2P0C7V6 817 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 TBXAS1P24557 533 aaPredicted RBP17.44■□□□□ 0.38
HOXD3-201ENST00000249440 DSG3P32926 999 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 SUPT20HL1Q3ZLR7 823 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 CRELD2Q6UXH1 353 aaPredicted RBP17.44■□□□□ 0.38
HOXD3-201ENST00000249440 PHF13Q86YI8 300 aaPredicted RBP17.44■□□□□ 0.38
HOXD3-201ENST00000249440 SCYL3Q8IZE3 742 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 FUKQ8N0W3 1084 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 CYP39A1Q9NYL5 469 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 ADAMTS5Q9UNA0 930 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 DNAJC8O75937 253 aaPredicted RBP17.44■□□□□ 0.38
HOXD3-201ENST00000249440 PIGRP01833 764 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 CETN2P41208 172 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 NAMPTP43490 491 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 WNT7BP56706 349 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 XRCC4Q13426 336 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 DAB2IPQ5VWQ8 1189 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 DCAF15Q66K64 600 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 PLEKHA7Q6IQ23 1121 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 PASD1Q8IV76 773 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 EXD1Q8NHP7 514 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 DEPTORQ8TB45 409 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 PORCNQ9H237 461 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 NEU2Q9Y3R4 380 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 PTPRJQ12913 1337 aa17.44■□□□□ 0.38
HOXD3-201ENST00000249440 TMEM120BA0PK00 339 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 TLR3O15455 904 aaKnown RBP17.43■□□□□ 0.38
HOXD3-201ENST00000249440 SBF1O95248 1867 aa17.43■□□□□ 0.38
HOXD3-201ENST00000249440 VPS41P49754 854 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms