RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 GTPBP10A4D1E9 387 aaKnown RBP13.3□□□□□ -0.28
LINC00339-213ENST00000642137 DDHD2O94830 711 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 CST3P01034 146 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-213ENST00000642137 GATMP50440 423 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 UBASH3AP57075 661 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 RBP5P82980 135 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 DSC1Q08554 894 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 CETN1Q12798 172 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 NR1I3Q14994 352 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 FAM117BQ6P1L5 589 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 TMCO2Q7Z6W1 182 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-213ENST00000642137 C18orf25Q96B23 403 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-213ENST00000642137 DDX27Q96GQ7 796 aaKnown RBP13.3□□□□□ -0.28
LINC00339-213ENST00000642137 UROC1Q96N76 676 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 NAP1L5Q96NT1 182 aaPredicted RBP13.3□□□□□ -0.28
LINC00339-213ENST00000642137 ZBED2Q9BTP6 218 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 MTMR12Q9C0I1 747 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 NRDE2Q9H7Z3 1164 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 RTN4Q9NQC3 1192 aaKnown RBP13.3□□□□□ -0.28
LINC00339-213ENST00000642137 ITGA11Q9UKX5 1188 aa13.3□□□□□ -0.28
LINC00339-213ENST00000642137 MKI67P46013 3256 aaKnown RBP13.3□□□□□ -0.28
LINC00339-213ENST00000642137 A0A1B0GTH6 734 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 ANO9A1A5B4 782 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 FSD2A1L4K1 749 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 CARNS1A5YM72 827 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 GOLGA6L3A6NEY3 463 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 PIRO00625 290 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 PHACTR2O75167 634 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 ALDH2P05091 517 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 MXI1P50539 228 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 RNASELQ05823 741 aaKnown RBP13.29□□□□□ -0.28
LINC00339-213ENST00000642137 SOX4Q06945 474 aaPredicted RBP13.29□□□□□ -0.28
LINC00339-213ENST00000642137 TRPC3Q13507 836 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 BTG3Q14201 252 aaPredicted RBP13.29□□□□□ -0.28
LINC00339-213ENST00000642137 CBWD6Q4V339 395 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 CBWD3Q5JTY5 395 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 CBWD5Q5RIA9 395 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 TDRD10Q5VZ19 366 aaKnown RBP13.29□□□□□ -0.28
LINC00339-213ENST00000642137 SARM1Q6SZW1 724 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 ZNF280BQ86YH2 543 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 COLGALT2Q8IYK4 626 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 LRRC43Q8N309 656 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 C1orf127Q8N9H9 656 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 EHBP1Q8NDI1 1231 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 FBXL13Q8NEE6 735 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 CXorf38Q8TB03 319 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 YME1L1Q96TA2 773 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 TMEM175Q9BSA9 504 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 CWH43Q9H720 699 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 MMRN2Q9H8L6 949 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 TUBGCP4Q9UGJ1 667 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 SIX4Q9UIU6 781 aa13.29□□□□□ -0.28
LINC00339-213ENST00000642137 R3HCC1Q9Y3T6 440 aaKnown RBP13.29□□□□□ -0.28
LINC00339-213ENST00000642137 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-213ENST00000642137 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-213ENST00000642137 LGALS16A8MUM7 142 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 PES1O00541 588 aaKnown RBP13.28□□□□□ -0.28
LINC00339-213ENST00000642137 CBFA2T2O43439 604 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 VNN1O95497 513 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 ITGB3P05106 788 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 PAX3P23760 479 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 ATICP31939 592 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 BIRC3Q13489 604 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 GSE1Q14687 1217 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 SGSM1Q2NKQ1 1148 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 FKBP15Q5T1M5 1219 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 C9orf57Q5W0N0 161 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 DCLRE1AQ6PJP8 1040 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 GBP6Q6ZN66 633 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 FIBCD1Q8N539 461 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 SP7Q8TDD2 431 aaPredicted RBP13.28□□□□□ -0.28
LINC00339-213ENST00000642137 RAB20Q9NX57 234 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 IFNKQ9P0W0 207 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 AGAP1Q9UPQ3 857 aa13.28□□□□□ -0.28
LINC00339-213ENST00000642137 TEX33O43247 280 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 TLL1O43897 1013 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 STAU1O95793 577 aaKnown RBP13.27□□□□□ -0.29
LINC00339-213ENST00000642137 HLA-DRAP01903 254 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 TPM3P06753 285 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 GALTP07902 379 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 KRT19P08727 400 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 POLR2BP30876 1174 aaKnown RBP13.27□□□□□ -0.29
LINC00339-213ENST00000642137 CLCNKBP51801 687 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 GUCY2FP51841 1108 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 PLCB2Q00722 1185 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 MYL7Q01449 175 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 UBXN1Q04323 297 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 KCNMA1Q12791 1236 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 NCOA4Q13772 614 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 UPP1Q16831 310 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 EXOC3L4Q17RC7 722 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 PAN2Q504Q3 1202 aaKnown RBP13.27□□□□□ -0.29
LINC00339-213ENST00000642137 EPC2Q52LR7 807 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 TDHQ8IZJ6 230 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 LRRC52Q8N7C0 313 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 LMO3Q8TAP4 145 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 TAS1R2Q8TE23 839 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 TAF4BQ92750 862 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 FAM84AQ96KN4 292 aa13.27□□□□□ -0.29
LINC00339-213ENST00000642137 ERGIC2Q96RQ1 377 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms