RNA–Protein interactions for RNA: ENST00000638144.1

CLN6-225, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 576 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-225	ENST00000638144	USP41	Q3LFD5	358 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	KIAA0319	Q5VV43	1072 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	KANK3	Q6NY19	840 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	ARMCX5	Q6P1M9	558 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	STXBP4	Q6ZWJ1	553 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	C12orf76	Q8N812	135 aa	Predicted RBP	13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	KIAA0895	Q8NCT3	520 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	ERCC4	Q92889	916 aa	Predicted RBP	13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	KLHL5	Q96PQ7	755 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	COL25A1	Q9BXS0	654 aa	Predicted RBP	13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	CHMP5	Q9NZZ3	219 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	USP25	Q9UHP3	1055 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	CD207	Q9UJ71	328 aa		13.61	□□□□□ -0.23
CLN6-225	ENST00000638144	GRXCR2	A6NFK2	248 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	CLIC2	O15247	247 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	EIF3D	O15371	548 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	TEX28	O15482	410 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	NCK2	O43639	380 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	LILRB3	O75022	631 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	RPN1	P04843	607 aa	Known RBP	13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	WEE2	P0C1S8	567 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	SPATA31D3	P0C874	917 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	KLRC2	P26717	231 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	TKT	P29401	623 aa	Known RBP	13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	PNOC	Q13519	176 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	KCNC3	Q14003	757 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	DCLRE1A	Q6PJP8	1040 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	SPATA31D4	Q6ZUB0	917 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	EFCAB13	Q8IY85	973 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	FMR1NB	Q8N0W7	255 aa	Predicted RBP	13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	MSLNL	Q96KJ4	702 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	UROC1	Q96N76	676 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	CDCA3	Q99618	268 aa	Predicted RBP	13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	TMEM206	Q9H813	350 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	PLEKHA5	Q9HAU0	1116 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	CHST7	Q9NS84	486 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	IRAK3	Q9Y616	596 aa		13.6	□□□□□ -0.23
CLN6-225	ENST00000638144	ADAM12	O43184	909 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	TGFB1I1	O43294	461 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	GART	P22102	1010 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	MCM4	P33991	863 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	CYP2J2	P51589	502 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	DPYD	Q12882	1025 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	SNW1	Q13573	536 aa	Known RBP	13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	TMEM132D	Q14C87	1099 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	POSTN	Q15063	836 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	ZBTB6	Q15916	424 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	PSMD5	Q16401	504 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	KYAT1	Q16773	422 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	LMBRD2	Q68DH5	695 aa	Predicted RBP	13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	ANKRD54	Q6NXT1	300 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	SYCE2	Q6PIF2	218 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	PALB2	Q86YC2	1186 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	CBWD2	Q8IUF1	395 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	ENGASE	Q8NFI3	743 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	ZNF507	Q8TCN5	953 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	SLC22A17	Q8WUG5	538 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	TTPAL	Q9BTX7	342 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	EMILIN2	Q9BXX0	1053 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	AGPAT3	Q9NRZ7	376 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	RBAK	Q9NYW8	714 aa	Predicted RBP	13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	HSPBP1	Q9NZL4	362 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	UBQLN1	Q9UMX0	589 aa	Known RBP	13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	NUB1	Q9Y5A7	615 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	TSC2	P49815	1807 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	UBE4B	O95155	1302 aa		13.59	□□□□□ -0.23
CLN6-225	ENST00000638144	C2orf16	Q68DN1	1984 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	TMEM189-UBE2V1	I3L0A0	370 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	MBTPS2	O43462	519 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	EXTL3	O43909	919 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	ADRB2	P07550	413 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	CLCN4	P51793	760 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	FAM160A1	Q05DH4	1040 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	RARS2	Q5T160	578 aa	Known RBP	13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	SCARA3	Q6AZY7	606 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	BRSK2	Q8IWQ3	736 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	SMYD4	Q8IYR2	804 aa	Predicted RBP	13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	RDH13	Q8NBN7	331 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	SMRP1	Q8NCR6	262 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	CASP10	Q92851	521 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	DDX27	Q96GQ7	796 aa	Known RBP	13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	UHRF1	Q96T88	793 aa	Predicted RBP	13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	PDE11A	Q9HCR9	933 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	MAPK8IP1	Q9UQF2	711 aa		13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	USP15	Q9Y4E8	981 aa	Predicted RBP	13.58	□□□□□ -0.24
CLN6-225	ENST00000638144	SPDYE4	A6NLX3	237 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	DLL1	O00548	723 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	ADH1A	P07327	375 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	SRGAP2B	P0DMP2	458 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	FGFR3	P22607	806 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	SP100	P23497	879 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	LRPAP1	P30533	357 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	RPL9	P32969	192 aa	Known RBP	13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	TFAM	Q00059	246 aa	Known RBP	13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	ELAVL2	Q12926	359 aa	Known RBP	13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	SMAD4	Q13485	552 aa	Known RBP	13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	BMT2	Q1RMZ1	405 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	SPATA1	Q5VX52	437 aa		13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	RSPO2	Q6UXX9	243 aa	Predicted RBP	13.57	□□□□□ -0.24
CLN6-225	ENST00000638144	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	13.57	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms