RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 KRT19P08727 400 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 KIF11P52732 1056 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 WDR44Q5JSH3 913 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 FAM26DQ5JW98 314 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 FBXO46Q6PJ61 603 aaPredicted RBP21.65■■□□□ 1.06
CLN3-250ENST00000636839 DNAAF5Q86Y56 855 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 DIS3LQ8TF46 1054 aaKnown RBP21.65■■□□□ 1.06
CLN3-250ENST00000636839 PARP2Q9UGN5 583 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 MYO6Q9UM54 1294 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 TNNC2P02585 160 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 HSPA1AP0DMV8 641 aaKnown RBP21.65■■□□□ 1.06
CLN3-250ENST00000636839 HSPA1BP0DMV9 641 aaKnown RBP21.65■■□□□ 1.06
CLN3-250ENST00000636839 IBSPP21815 317 aaPredicted RBP21.65■■□□□ 1.06
CLN3-250ENST00000636839 AP3M2P53677 418 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 NOP14P78316 857 aaKnown RBP21.65■■□□□ 1.06
CLN3-250ENST00000636839 TMEM132DQ14C87 1099 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 KYAT1Q16773 422 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 ALKAL1Q6UXT8 129 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 FAM126BQ8IXS8 530 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 C18orf25Q96B23 403 aaPredicted RBP21.65■■□□□ 1.06
CLN3-250ENST00000636839 KIF12Q96FN5 646 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 ANKRD36BP1Q96IX9 119 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 SNX27Q96L92 541 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 ASB7Q9H672 318 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 C1orf112Q9NSG2 853 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 PCDHB2Q9Y5E7 798 aa21.65■■□□□ 1.06
CLN3-250ENST00000636839 TRIP11Q15643 1979 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 AKR1B10O60218 316 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 PQBP1O60828 265 aaKnown RBP21.64■■□□□ 1.05
CLN3-250ENST00000636839 ITGB3P05106 788 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 CCDC175P0C221 793 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 MFAP3P55082 362 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 CCDC170Q8IYT3 715 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 OLIG1Q8TAK6 271 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 XYLT2Q9H1B5 865 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 DEF6Q9H4E7 631 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 LZTFL1Q9NQ48 299 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 ADAMTS1Q9UHI8 967 aa21.64■■□□□ 1.05
CLN3-250ENST00000636839 A0A087X0T9 212 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 RCCD1A6NED2 376 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 CYP26A1O43174 497 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 SGPL1O95470 568 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 ASS1P00966 412 aaKnown RBP21.63■■□□□ 1.05
CLN3-250ENST00000636839 FAM228BP0C875 321 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 PAK2Q13177 524 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 MAPK8IP2Q13387 824 aaPredicted RBP21.63■■□□□ 1.05
CLN3-250ENST00000636839 TRPC3Q13507 836 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 SHC3Q92529 594 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 LPPQ93052 612 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.63■■□□□ 1.05
CLN3-250ENST00000636839 CRISPLD2Q9H0B8 497 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 TRIM10Q9UDY6 481 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 GPR182O15218 404 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 ZC3H11AO75152 810 aaKnown RBP eCLIP21.63■■□□□ 1.05
CLN3-250ENST00000636839 RFX1P22670 979 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 CLCN1P35523 988 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 AFF1P51825 1210 aaKnown RBP21.63■■□□□ 1.05
CLN3-250ENST00000636839 APBB1IPQ7Z5R6 666 aaPredicted RBP21.63■■□□□ 1.05
CLN3-250ENST00000636839 IRX2Q9BZI1 471 aaPredicted RBP21.63■■□□□ 1.05
CLN3-250ENST00000636839 TUBGCP4Q9UGJ1 667 aa21.63■■□□□ 1.05
CLN3-250ENST00000636839 EIF3CLB5ME19 914 aaKnown RBP21.62■■□□□ 1.05
CLN3-250ENST00000636839 CD4P01730 458 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 FERP16591 822 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 CYLC1P35663 651 aaPredicted RBP21.62■■□□□ 1.05
CLN3-250ENST00000636839 PRKCIP41743 596 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 YARSP54577 528 aaKnown RBP21.62■■□□□ 1.05
CLN3-250ENST00000636839 POU5F1Q01860 360 aaKnown RBP21.62■■□□□ 1.05
CLN3-250ENST00000636839 FAM71AQ8IYT1 594 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 SLC20A1Q8WUM9 679 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 ZFP42Q96MM3 310 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 EIF3CQ99613 913 aaKnown RBP21.62■■□□□ 1.05
CLN3-250ENST00000636839 FAM105AQ9NUU6 356 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 POLIQ9UNA4 740 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 CITO14578 2027 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 SSU72P8A0A1W2PR75 194 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 PPEF2O14830 753 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 RPLP2P05387 115 aaKnown RBP21.62■■□□□ 1.05
CLN3-250ENST00000636839 POLR2BP30876 1174 aaKnown RBP21.62■■□□□ 1.05
CLN3-250ENST00000636839 GCNT1Q02742 428 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 CUL2Q13617 745 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 SLC47A2Q86VL8 602 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 PLEKHA5Q9HAU0 1116 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 DPP3Q9NY33 737 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 C2CD2Q9Y426 696 aa21.62■■□□□ 1.05
CLN3-250ENST00000636839 ZSCAN12O43309 604 aa21.61■■□□□ 1.05
CLN3-250ENST00000636839 ARHGAP25P42331 645 aa21.61■■□□□ 1.05
CLN3-250ENST00000636839 SGSM1Q2NKQ1 1148 aa21.61■■□□□ 1.05
CLN3-250ENST00000636839 NYAP1Q6ZVC0 841 aa21.61■■□□□ 1.05
CLN3-250ENST00000636839 LACRTQ9GZZ8 138 aa21.61■■□□□ 1.05
CLN3-250ENST00000636839 PCDH10Q9P2E7 1040 aa21.61■■□□□ 1.05
CLN3-250ENST00000636839 NXF1Q9UBU9 619 aaKnown RBP21.61■■□□□ 1.05
CLN3-250ENST00000636839 AGAP1Q9UPQ3 857 aa21.61■■□□□ 1.05
CLN3-250ENST00000636839 SMIM28A0A1B0GU29 152 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 KRT5P13647 590 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 ACO1P21399 889 aaKnown RBP21.6■■□□□ 1.05
CLN3-250ENST00000636839 DSC3Q14574 896 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 GPNMBQ14956 572 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 ZBTB6Q15916 424 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 ZNF699Q32M78 642 aa21.6■■□□□ 1.05
CLN3-250ENST00000636839 SCARA5Q6ZMJ2 495 aa21.6■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms