RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 MTHFD1LQ6UB35 978 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 OR6J1Q8NGC5 347 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 NPLOC4Q8TAT6 608 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 ZNF564Q8TBZ8 553 aaPredicted RBP23.63■■□□□ 1.37
PNKP-220ENST00000627232 AENQ8WTP8 325 aaKnown RBP23.63■■□□□ 1.37
PNKP-220ENST00000627232 KRT12Q99456 494 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 NUP85Q9BW27 656 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 CDT1Q9H211 546 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 MINDY3Q9H8M7 445 aa23.63■■□□□ 1.37
PNKP-220ENST00000627232 AVENQ9NQS1 362 aaPredicted RBP23.63■■□□□ 1.37
PNKP-220ENST00000627232 CYP1A1P04798 512 aaPredicted RBP23.62■■□□□ 1.37
PNKP-220ENST00000627232 ZNF286BP0CG31 522 aa23.62■■□□□ 1.37
PNKP-220ENST00000627232 SMC1AQ14683 1233 aaKnown RBP23.62■■□□□ 1.37
PNKP-220ENST00000627232 PTPROQ16827 1216 aa23.62■■□□□ 1.37
PNKP-220ENST00000627232 IFT20Q8IY31 132 aa23.62■■□□□ 1.37
PNKP-220ENST00000627232 UBL4BQ8N7F7 174 aa23.62■■□□□ 1.37
PNKP-220ENST00000627232 WNT8AQ9H1J5 351 aa23.62■■□□□ 1.37
PNKP-220ENST00000627232 GDF3Q9NR23 364 aa23.62■■□□□ 1.37
PNKP-220ENST00000627232 B4GALT5O43286 388 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 MCF2P10911 925 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 RNASE9P60153 205 aaKnown RBP23.61■■□□□ 1.37
PNKP-220ENST00000627232 SLC7A5Q01650 507 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 GABPB1Q06547 395 aaPredicted RBP23.61■■□□□ 1.37
PNKP-220ENST00000627232 DGKDQ16760 1214 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 KYAT1Q16773 422 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 MORN1Q5T089 497 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 CST9Q5W186 159 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 THNSL1Q8IYQ7 743 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 RBBP8NLQ8NC74 664 aaPredicted RBP23.61■■□□□ 1.37
PNKP-220ENST00000627232 ZBTB10Q96DT7 871 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 NAP1L3Q99457 506 aaPredicted RBP23.61■■□□□ 1.37
PNKP-220ENST00000627232 MTMR12Q9C0I1 747 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 ZHX1Q9UKY1 873 aaPredicted RBP23.61■■□□□ 1.37
PNKP-220ENST00000627232 KAT6AQ92794 2004 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 MGAMO43451 1857 aa23.61■■□□□ 1.37
PNKP-220ENST00000627232 ZEB2O60315 1214 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 TNNC2P02585 160 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 MYBL2P10244 700 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 ZNF132P52740 706 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 CENPCQ03188 943 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 PPFIA1Q13136 1202 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 TMEM270Q6UE05 265 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 MCOLN2Q8IZK6 566 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 FAM212AQ96EL1 285 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 ANKRD36BP1Q96IX9 119 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 ZNF668Q96K58 619 aaPredicted RBP23.6■■□□□ 1.37
PNKP-220ENST00000627232 RPF1Q9H9Y2 349 aaKnown RBP23.6■■□□□ 1.37
PNKP-220ENST00000627232 CNOT8Q9UFF9 292 aaKnown RBP23.6■■□□□ 1.37
PNKP-220ENST00000627232 AKT3Q9Y243 479 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 UMODL1Q5DID0 1318 aa23.6■■□□□ 1.37
PNKP-220ENST00000627232 A0A087WZ62 844 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 A0A0U1RQG5 324 aaPredicted RBP23.59■■□□□ 1.37
PNKP-220ENST00000627232 MANSC4A6NHS7 340 aaPredicted RBP23.59■■□□□ 1.37
PNKP-220ENST00000627232 CST3P01034 146 aaPredicted RBP23.59■■□□□ 1.37
PNKP-220ENST00000627232 IQCF3P0C7M6 154 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 TMEM191BP0C7N4 346 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 EPHB4P54760 987 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 HUNKP57058 714 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 TRPC3Q13507 836 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 GRIK4Q16099 956 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 PPP2R5EQ16537 467 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 AMHR2Q16671 573 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 DCAF12L1Q5VU92 463 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 FDXACB1Q9BRP7 624 aaPredicted RBP23.59■■□□□ 1.37
PNKP-220ENST00000627232 NIF3L1Q9GZT8 377 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 SLITRK6Q9H5Y7 841 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 RRN3P2A6NIE6 340 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 KRIT1O00522 736 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 ATMINO43313 823 aaPredicted RBP23.59■■□□□ 1.37
PNKP-220ENST00000627232 HEXIM1O94992 359 aaKnown RBP23.59■■□□□ 1.37
PNKP-220ENST00000627232 CTNNA2P26232 953 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 GNA15P30679 374 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 TNNT3P45378 269 aaPredicted RBP23.59■■□□□ 1.37
PNKP-220ENST00000627232 MYL6P60660 151 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 MAP2K5Q13163 448 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 MESDQ14696 234 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 EMBQ6PCB8 327 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 ZNF410Q86VK4 478 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 EIF1ADQ8N9N8 165 aaKnown RBP23.59■■□□□ 1.37
PNKP-220ENST00000627232 CD101Q93033 1021 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 FAXDC2Q96IV6 333 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 VCPIP1Q96JH7 1222 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 ZSWIM1Q9BR11 485 aa23.59■■□□□ 1.37
PNKP-220ENST00000627232 GPR25O00155 361 aa23.58■■□□□ 1.36
PNKP-220ENST00000627232 ITGBL1O95965 494 aaPredicted RBP23.58■■□□□ 1.36
PNKP-220ENST00000627232 COMTP21964 271 aa23.58■■□□□ 1.36
PNKP-220ENST00000627232 NSFP46459 744 aaKnown RBP23.58■■□□□ 1.36
PNKP-220ENST00000627232 TFAMQ00059 246 aaKnown RBP23.58■■□□□ 1.36
PNKP-220ENST00000627232 NNTQ13423 1086 aa23.58■■□□□ 1.36
PNKP-220ENST00000627232 RASAL3Q86YV0 1011 aa23.58■■□□□ 1.36
PNKP-220ENST00000627232 KLHL7Q8IXQ5 586 aa23.58■■□□□ 1.36
PNKP-220ENST00000627232 EFCAB13Q8IY85 973 aa23.58■■□□□ 1.36
PNKP-220ENST00000627232 RNPC3Q96LT9 517 aaKnown RBP23.58■■□□□ 1.36
PNKP-220ENST00000627232 CPA4Q9UI42 421 aa23.58■■□□□ 1.36
PNKP-220ENST00000627232 UTRNP46939 3433 aa23.57■■□□□ 1.36
PNKP-220ENST00000627232 CCDC66A2RUB6 948 aa23.57■■□□□ 1.36
PNKP-220ENST00000627232 TMEM110-MUSTN1A8MSY1 372 aa23.57■■□□□ 1.36
PNKP-220ENST00000627232 RAD51CO43502 376 aa23.57■■□□□ 1.36
PNKP-220ENST00000627232 CALCAP01258 141 aa23.57■■□□□ 1.36
PNKP-220ENST00000627232 GLI1P08151 1106 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms