RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 MMP13P45452 471 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 EEPD1Q7L9B9 569 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 TMC2Q8TDI7 906 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 MORC4Q8TE76 937 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 NSUN6Q8TEA1 469 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 ZNF526Q8TF50 670 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 ARHGEF2Q92974 986 aaKnown RBP13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 JPH2Q9BR39 696 aaPredicted RBP13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 HACL1Q9UJ83 578 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 ANAPC5Q9UJX4 755 aa13.78□□□□□ -0.2
CCDC88A-214ENST00000621814 MTA2O94776 668 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 KRT10P13645 584 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 ATF2P15336 505 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 ATF7P17544 494 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 DSG3P32926 999 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 SP2Q02086 613 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 FSTL1Q12841 308 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 ZKSCAN8Q15776 578 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 CYP4F22Q6NT55 531 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 ZBTB33Q86T24 672 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 EXOC3L1Q86VI1 746 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 CNPY4Q8N129 248 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 TAB3Q8N5C8 712 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 CCDC197Q8NCU1 140 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 SLC17A8Q8NDX2 589 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 DEPTORQ8TB45 409 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 HVCN1Q96D96 273 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 PAIP2Q9BPZ3 127 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 LRRC19Q9H756 370 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 RBAKQ9NYW8 714 aaPredicted RBP13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 SAMD15Q9P1V8 674 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 PCDHB2Q9Y5E7 798 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 UMODL1Q5DID0 1318 aa13.77□□□□□ -0.2
CCDC88A-214ENST00000621814 K7ERI5 159 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 AGTP01019 485 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 UNGP13051 313 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 KCNA2P16389 499 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 GNA15P30679 374 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 TAS2R40P59535 323 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 SNRPFP62306 86 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 ANKRD20A8PQ5CZ79 823 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF365Q70YC5 407 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 YTHDF3Q7Z739 585 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 ANKS4BQ8N8V4 417 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 SLC40A1Q9NP59 571 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 FBXO40Q9UH90 709 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 GAS8O95995 478 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 TNFAIP1Q13829 316 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 MICALL2Q8IY33 904 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 ATXN2LQ8WWM7 1075 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 MSTO1Q9BUK6 570 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 PICK1Q9NRD5 415 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 AAASQ9NRG9 546 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 KLC4Q9NSK0 619 aa13.77□□□□□ -0.21
CCDC88A-214ENST00000621814 RBBP6Q7Z6E9 1792 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 FSCN2O14926 492 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 TLR3O15455 904 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 SCTRP47872 440 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 BACE1P56817 501 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 MTM1Q13496 603 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 TMEM132BQ14DG7 1078 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 EMC2Q15006 297 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 CYP1B1Q16678 543 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 TAOK1Q7L7X3 1001 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 MCPH1Q8NEM0 835 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 SNF8Q96H20 258 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 FBXL18Q96ME1 805 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 NTPCRQ9BSD7 190 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 APOBEC3GQ9HC16 384 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 CNOT7Q9UIV1 285 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 MYPNQ86TC9 1320 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 TMEM120BA0PK00 339 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 EXTL3O43909 919 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 PAEPP09466 180 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 TCF4P15884 667 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 RXRBP28702 533 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 GBP1P32455 592 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 GCNT1Q02742 428 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 ANKS1BQ7Z6G8 1248 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 OR5B17Q8NGF7 314 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 SPIRE2Q8WWL2 714 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 PAGR1Q9BTK6 254 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 HAPLN2Q9GZV7 340 aa13.76□□□□□ -0.21
CCDC88A-214ENST00000621814 TCP11X1B4DZS4 312 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 GH1P01241 217 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 ZSCAN5DPP0CG00 497 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 RPL7AP62424 266 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 CEP57Q86XR8 500 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 ASAP3Q8TDY4 903 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 THOC1Q96FV9 657 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 RUNDC3BQ96NL0 473 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF317Q96PQ6 595 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 DCLK3Q9C098 648 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 ZNF541Q9H0D2 1346 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 TP73O15350 636 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 PSMC4P43686 418 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 OSTNP61366 133 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 PLCB3Q01970 1234 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 CNTN2Q02246 1040 aa13.75□□□□□ -0.21
CCDC88A-214ENST00000621814 TCEAL1Q15170 157 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms