RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 TEX2Q8IWB9 1127 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 MDM1Q8TC05 714 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 AGAP3Q96P47 875 aa14.78□□□□□ -0.04
CPSF1-212ENST00000616140 MARCOQ9UEW3 520 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 SCAF8Q9UPN6 1271 aaKnown RBP14.78□□□□□ -0.04
CPSF1-212ENST00000616140 TXNP10599 105 aaKnown RBP14.77□□□□□ -0.04
CPSF1-212ENST00000616140 PGM1P36871 562 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 AP2B1P63010 937 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 DEUP1Q05D60 604 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 FIGNQ5HY92 759 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 CENPPQ6IPU0 288 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 RMDN2Q96LZ7 410 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 MXRA8Q9BRK3 442 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 NPHS2Q9NP85 383 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 FBXO28Q9NVF7 368 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 CEP170BQ9Y4F5 1589 aaPredicted RBP14.77□□□□□ -0.04
CPSF1-212ENST00000616140 RNF103-CHMP3A0A140T963 221 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 LRRIQ3A6PVS8 624 aaPredicted RBP14.77□□□□□ -0.04
CPSF1-212ENST00000616140 FOXN3O00409 490 aaPredicted RBP14.77□□□□□ -0.04
CPSF1-212ENST00000616140 RBP3P10745 1247 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 DTX3LQ8TDB6 740 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 TMEM8AQ9HCN3 771 aa14.77□□□□□ -0.04
CPSF1-212ENST00000616140 ZC3H7BQ9UGR2 993 aaKnown RBP14.77□□□□□ -0.04
CPSF1-212ENST00000616140 FAM205AQ6ZU69 1335 aa14.77□□□□□ -0.05
CPSF1-212ENST00000616140 APOL1O14791 398 aa14.77□□□□□ -0.05
CPSF1-212ENST00000616140 MSH4O15457 936 aa14.77□□□□□ -0.05
CPSF1-212ENST00000616140 STMN1P16949 149 aa14.77□□□□□ -0.05
CPSF1-212ENST00000616140 CASP4P49662 377 aa14.77□□□□□ -0.05
CPSF1-212ENST00000616140 FASTKD1Q53R41 847 aaKnown RBP14.77□□□□□ -0.05
CPSF1-212ENST00000616140 TRPM8Q7Z2W7 1104 aa14.77□□□□□ -0.05
CPSF1-212ENST00000616140 TTC8Q8TAM2 541 aa14.77□□□□□ -0.05
CPSF1-212ENST00000616140 TARS2Q9BW92 718 aaKnown RBP14.77□□□□□ -0.05
CPSF1-212ENST00000616140 WDR35Q9P2L0 1181 aa14.77□□□□□ -0.05
CPSF1-212ENST00000616140 ZBBXA8MT70 800 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 SLC26A4O43511 780 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 MYCP01106 439 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ZFXP17010 805 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 MAGEA4P43358 317 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PRAMEP78395 509 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PRKCEQ02156 737 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 DACT3Q96B18 629 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 AGBL1Q96MI9 1066 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PACSIN1Q9BY11 444 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 GCOM2Q9BZD3 368 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 SEMA6BQ9H3T3 888 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ARHGAP20Q9P2F6 1191 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 CHMP2BQ9UQN3 213 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 H3BRJ5 948 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 CST8O60676 142 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 MED24O75448 989 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 GRAP2O75791 330 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 LCP1P13796 627 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ITGA8P53708 1063 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 TXNRD3Q86VQ6 643 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 SEPT1Q8WYJ6 367 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ARL8AQ96BM9 186 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PGBD4Q96DM1 585 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 KIFC3Q9BVG8 833 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 GTF3C4Q9UKN8 822 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 FOXD4Q12950 439 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PTGISQ16647 500 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ITPRIPL1Q6GPH6 555 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 APOBEC3FQ8IUX4 373 aaKnown RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 THEM5Q8N1Q8 247 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ALKBH8Q96BT7 664 aaKnown RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ACAP3Q96P50 834 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 RUSC1Q9BVN2 902 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 TSSK1BQ9BXA7 367 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ZNRF3Q9ULT6 936 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 DNAJC8O75937 253 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 WEE2P0C1S8 567 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 GNAT1P11488 350 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 FGFR2P21802 821 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PON1P27169 355 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 ELF1P32519 619 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 TSPY1Q01534 308 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 NSUN2Q08J23 767 aaKnown RBP eCLIP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 EZH2Q15910 746 aaKnown RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PKN1Q16512 942 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 SGSM1Q2NKQ1 1148 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PAPD7Q5XG87 772 aaKnown RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 CASKIN2Q8WXE0 1202 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 TRPV6Q9H1D0 765 aa14.76□□□□□ -0.05
CPSF1-212ENST00000616140 PSMC3IPQ9P2W1 217 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-212ENST00000616140 AK9Q5TCS8 1911 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 NFIAQ12857 509 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 PIGHQ14442 188 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-212ENST00000616140 EP400NLQ6ZTU2 488 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 C3orf62Q6ZUJ4 267 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 SLC13A5Q86YT5 568 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-212ENST00000616140 KIF2BQ8N4N8 673 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 FAM151AQ8WW52 585 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 RAPGEF5Q92565 580 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 MAGEB5Q9BZ81 275 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 RALAP11233 206 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 MAPK7Q13164 816 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 EMC2Q15006 297 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 SMTNL2Q2TAL5 461 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 ADGRA1Q86SQ6 560 aa14.75□□□□□ -0.05
CPSF1-212ENST00000616140 CEP70Q8NHQ1 597 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms