RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CIITAP33076 1130 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 HPCAP84074 193 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TBC1D25Q3MII6 688 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TMPRSS6Q8IU80 811 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TC2NQ8N9U0 490 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 CLIC4Q9Y696 253 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PTPRMP28827 1452 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 BTN3A3O00478 584 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 MED26O95402 600 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 DEXIO95424 95 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 MTDHQ86UE4 582 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 FNIP1Q8TF40 1166 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TMEM237Q96Q45 408 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TSSK1BQ9BXA7 367 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 NOL6Q9H6R4 1146 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 HAO1Q9UJM8 370 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 MAST3O60307 1309 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PSTPIP1O43586 416 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 CDC25CP30307 473 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 RNF220Q5VTB9 566 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TMEM132EQ6IEE7 984 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 KIAA0408Q6ZU52 694 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 REXO4Q9GZR2 422 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 RFX7Q2KHR2 1363 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 IFNA14P01570 189 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 AFPP02771 609 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 C6orf183Q5T699 404 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 NIPAL1Q6NVV3 410 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 IKBIPQ70UQ0 350 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 EXOC3L1Q86VI1 746 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 STK33Q9BYT3 514 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TRMT6Q9UJA5 497 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 ING4Q9UNL4 249 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 RGPD8O14715 1765 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 SH3D21A4FU49 640 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 NDUFB5O43674 189 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 DDX5P17844 614 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 GP5P40197 560 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 SLC9C2Q5TAH2 1124 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 SCARA3Q6AZY7 606 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 NET1Q7Z628 596 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PRPF39Q86UA1 669 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TDRD5Q8NAT2 981 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PAGE5Q96GU1 130 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 GRIP2Q9C0E4 1043 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 KLC2Q9H0B6 622 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 GPAMQ9HCL2 828 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 A0A0G2JPF8 293 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 HNRNPCL3B7ZW38 293 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 HNRNPCL4P0DMR1 293 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 MFAP3P55082 362 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 ZNF844Q08AG5 666 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 TAF1BQ53T94 588 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 HP1BP3Q5SSJ5 553 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 ZNF786Q8N393 782 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 ZNF304Q9HCX3 659 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 SYNGAP1Q96PV0 1343 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 GNPATO15228 680 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 FCGR1AP12314 374 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PRKACAP17612 351 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 BTBD6Q96KE9 485 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 SEZ6LQ9BYH1 1024 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PLCL2Q9UPR0 1127 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PRR23D1E9PI22 279 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 ENO1P06733 434 aaKnown RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PRR23D2P0DMB1 279 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 SYCE2Q6PIF2 218 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 RFX8Q6ZV50 586 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 WAPLQ7Z5K2 1190 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 LRRN4CLQ8ND94 238 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 MLXIPLQ9NP71 852 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 CNNM1Q9NRU3 951 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 DBF4Q9UBU7 674 aaPredicted RBP5.2□□□□□ -1.58
VPS13D-213ENST00000613099 PTPN22Q9Y2R2 807 aa5.2□□□□□ -1.58
VPS13D-213ENST00000613099 ITIH2P19823 946 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ARHGDIAP52565 204 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ARL4CP56559 192 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 YWHAGP61981 247 aaKnown RBP eCLIP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 EIF4A2Q14240 407 aaKnown RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 NFE2L1Q14494 772 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 MAN2A1Q16706 1144 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 EFHC1Q5JVL4 640 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 FNDC8Q8TC99 324 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 PLEKHO2Q8TD55 490 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 WNK4Q96J92 1243 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ERVK-11Q9UQG0 969 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 H0YCG3 227 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SHQ1Q6PI26 577 aaKnown RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 DSCC1Q9BVC3 393 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SLC6A15Q9H2J7 730 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 LYNP07948 512 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 CDCA2Q69YH5 1023 aaPredicted RBP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SPIRE2Q8WWL2 714 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 C19orf60Q96EN9 201 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 GGT7Q9UJ14 662 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 AGAP1Q9UPQ3 857 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 SORCS3Q9UPU3 1222 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 PABPC4Q13310 644 aaKnown RBP eCLIP5.19□□□□□ -1.58
VPS13D-213ENST00000613099 ADAM9Q13443 819 aa5.19□□□□□ -1.58
VPS13D-213ENST00000613099 PCGF5Q86SE9 256 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms