RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 FAM13AO94988 1023 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 PIGRP01833 764 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 ALDH2P05091 517 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 HOXB8P17481 243 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-214ENST00000600840 AOC1P19801 751 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 IGFBP6P24592 240 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-214ENST00000600840 CLCN4P51793 760 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 DSC1Q08554 894 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 PPP2R5AQ15172 486 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 BMT2Q1RMZ1 405 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 SLC39A4Q6P5W5 647 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 TMC5Q6UXY8 1006 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 RNF168Q8IYW5 571 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-214ENST00000600840 URGCPQ8TCY9 931 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 SCFD1Q8WVM8 642 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 RIN2Q8WYP3 895 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-214ENST00000600840 B3GALT6Q96L58 329 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 CCDC43Q96MW1 224 aaKnown RBP9.57□□□□□ -0.88
TRIM28-214ENST00000600840 PAAF1Q9BRP4 392 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 TMEM175Q9BSA9 504 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 FUCA2Q9BTY2 467 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 NUP62CLQ9H1M0 184 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 PTPRHQ9HD43 1115 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 KMT5AQ9NQR1 393 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 DLL3Q9NYJ7 618 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 KLK14Q9P0G3 267 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 RALYQ9UKM9 306 aaKnown RBP9.57□□□□□ -0.88
TRIM28-214ENST00000600840 TBX20Q9UMR3 447 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 GDAQ9Y2T3 454 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 STYXL1Q9Y6J8 313 aa9.57□□□□□ -0.88
TRIM28-214ENST00000600840 CNTNAP2Q9UHC6 1331 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 A0A1B0GUA9 196 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 FSD2A1L4K1 749 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 PPP1R3GB7ZBB8 358 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 C2CD2LO14523 706 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 TGFB1I1O43294 461 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 TBCAO75347 108 aaKnown RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 NPTXRO95502 500 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 KRT18P05783 430 aaKnown RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 SRGAP2BP0DMP2 458 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 CD44P16070 742 aaKnown RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 SCP2P22307 547 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 PROZP22891 400 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 AXLP30530 894 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 OR1G1P47890 313 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 EFNA5P52803 228 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 ITIH3Q06033 890 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 DMP1Q13316 513 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 TFDP1Q14186 410 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 RSPO4Q2I0M5 234 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 FAM26FQ5R3K3 315 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 CCDC183Q5T5S1 534 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 ZNF658Q5TYW1 1059 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 KIAA0319Q5VV43 1072 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 NOTUMQ6P988 496 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 MAP4K3Q8IVH8 894 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 TDRD5Q8NAT2 981 aaKnown RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 TMEM174Q8WUU8 243 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 SMARCE1Q969G3 411 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 IFT74Q96LB3 600 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 FAM193BQ96PV7 902 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 GPR62Q9BZJ7 368 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 HAPLN2Q9GZV7 340 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 KCTD10Q9H3F6 313 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 SLC39A2Q9NP94 309 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 TBC1D7Q9P0N9 293 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 KANSL3Q9P2N6 904 aa9.56□□□□□ -0.88
TRIM28-214ENST00000600840 KMT2BQ9UMN6 2715 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 MTCL1Q9Y4B5 1905 aaKnown RBP9.56□□□□□ -0.88
TRIM28-214ENST00000600840 ZMYM2Q9UBW7 1377 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 LRRIQ4A6NIV6 560 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 CCDC169A6NNP5 214 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 K7ERI5 159 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 EIF3DO15371 548 aaKnown RBP eCLIP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 TEX28O15482 410 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 N4BP1O75113 896 aaKnown RBP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 SMC2O95347 1197 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 SOD2P04179 222 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 SPATA31D3P0C874 917 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 KLRC2P26717 231 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 ADSSP30520 456 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 PRCPP42785 496 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 SMTNP53814 917 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 MCCD1P59942 119 aaPredicted RBP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 PCBP1Q15365 356 aaKnown RBP eCLIP9.55□□□□□ -0.886e-11■■■□□ 16.5
TRIM28-214ENST00000600840 ZCWPW2Q504Y3 356 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 EEF1DP3Q658K8 133 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 ISM2Q6H9L7 571 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 KIAA1841Q6NSI8 718 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 CES5AQ6NT32 575 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 CAVIN1Q6NZI2 390 aaKnown RBP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 SPATA31D4Q6ZUB0 917 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 SIX5Q8N196 739 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 GUF1Q8N442 669 aaKnown RBP9.55□□□□□ -0.88
TRIM28-214ENST00000600840 TRIML1Q8N9V2 468 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 DEPTORQ8TB45 409 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 RSPH1Q8WYR4 309 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 HVCN1Q96D96 273 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 CCDC34Q96HJ3 373 aa9.55□□□□□ -0.88
TRIM28-214ENST00000600840 PRIMPOLQ96LW4 560 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms