RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PRKCEQ02156 737 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 HABP4Q5JVS0 413 aaKnown RBP21.54■■□□□ 1.04
UPF1-207ENST00000599848 MXRA8Q9BRK3 442 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 FAM200BP0CF97 657 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 NPEPPSP55786 919 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 INHBEP58166 350 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 CACNB2Q08289 660 aaPredicted RBP21.54■■□□□ 1.04
UPF1-207ENST00000599848 PIGHQ14442 188 aaPredicted RBP21.54■■□□□ 1.04
UPF1-207ENST00000599848 ZNF746Q6NUN9 644 aaPredicted RBP21.54■■□□□ 1.04
UPF1-207ENST00000599848 ENC1O14682 589 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 SYNCRIPO60506 623 aaKnown RBP21.54■■□□□ 1.04
UPF1-207ENST00000599848 UGT3A1Q6NUS8 523 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 TMEM60Q9H2L4 133 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 PPCSQ9HAB8 311 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 PKP3Q9Y446 797 aa21.54■■□□□ 1.04
UPF1-207ENST00000599848 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 UBXN8O00124 270 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 P4HA2O15460 535 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 ZNF177Q13360 481 aaPredicted RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 TBK1Q9UHD2 729 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 ADCY10Q96PN6 1610 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 EEF2KO00418 725 aaKnown RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 TLR2O60603 784 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 RAG1P15918 1043 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 NCOA4Q13772 614 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 ZKSCAN8Q15776 578 aaPredicted RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 TACO1Q9BSH4 297 aaKnown RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 RTN2O75298 545 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 RFFLQ8WZ73 363 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 MRPL9Q9BYD2 267 aaKnown RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 GFAPP14136 432 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 SESN3P58005 492 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 C10orf120Q5SQS8 335 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 ZFP42Q96MM3 310 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 PRPF18Q99633 342 aaKnown RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.53■■□□□ 1.041e-6■■■□□ 16.8
UPF1-207ENST00000599848 TRPM5Q9NZQ8 1165 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 AXIN2Q9Y2T1 843 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 TYK2P29597 1187 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 TRMT10CQ7L0Y3 403 aaKnown RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 ACRBPQ8NEB7 543 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 XAB2Q9HCS7 855 aaKnown RBP21.53■■□□□ 1.04
UPF1-207ENST00000599848 SPTLC3Q9NUV7 552 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 HSPBP1Q9NZL4 362 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 SNX5Q9Y5X3 404 aa21.53■■□□□ 1.04
UPF1-207ENST00000599848 SYF2O95926 243 aaKnown RBP21.52■■□□□ 1.04
UPF1-207ENST00000599848 GEMIN4P57678 1058 aaKnown RBP21.52■■□□□ 1.04
UPF1-207ENST00000599848 FASTKD1Q53R41 847 aaKnown RBP21.52■■□□□ 1.04
UPF1-207ENST00000599848 ZNF438Q7Z4V0 828 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 RNF25Q96BH1 459 aaPredicted RBP21.52■■□□□ 1.04
UPF1-207ENST00000599848 KLHL29Q96CT2 875 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 UNC45AQ9H3U1 944 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 LATS2Q9NRM7 1088 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 ZFATQ9P243 1243 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 KIAA1257Q9ULG3 409 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 ADGRB3O60242 1522 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 USP42Q9H9J4 1324 aaKnown RBP21.52■■□□□ 1.04
UPF1-207ENST00000599848 MSCO60682 206 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 FTLP02792 175 aaPredicted RBP21.52■■□□□ 1.04
UPF1-207ENST00000599848 AMHP03971 560 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 AARS2Q5JTZ9 985 aaKnown RBP21.52■■□□□ 1.04
UPF1-207ENST00000599848 VPS37AQ8NEZ2 397 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 CXorf38Q8TB03 319 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 TTC17Q96AE7 1141 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 ZBTB9Q96C00 473 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 RHOBTB3O94955 611 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 SERPIND1P05546 499 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 ACADMP11310 421 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 ZNF677Q86XU0 584 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 TADA1Q96BN2 335 aa21.52■■□□□ 1.04
UPF1-207ENST00000599848 PRDM15P57071 1507 aaPredicted RBP21.52■■□□□ 1.03
UPF1-207ENST00000599848 PDGFRAP16234 1089 aa21.52■■□□□ 1.03
UPF1-207ENST00000599848 HNRNPRO43390 633 aaKnown RBP21.51■■□□□ 1.03
UPF1-207ENST00000599848 ILF2Q12905 390 aaKnown RBP21.51■■□□□ 1.03
UPF1-207ENST00000599848 PTRHD1Q6GMV3 140 aaKnown RBP21.51■■□□□ 1.03
UPF1-207ENST00000599848 TRAPPC11Q7Z392 1133 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 TAGAPQ8N103 731 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 PPM1NQ8N819 430 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 HTATIP2Q9BUP3 242 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 GPR63Q9BZJ6 419 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 RUBCNLQ9H714 662 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 NAGPAQ9UK23 515 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 SF3A3Q12874 501 aaKnown RBP eCLIP21.51■■□□□ 1.031e-6■■■□□ 19.1
UPF1-207ENST00000599848 PTK6Q13882 451 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 STAG2Q8N3U4 1231 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 TTLL13PA6NNM8 815 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 CXCL11O14625 94 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 XYLBO75191 536 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 CDH2P19022 906 aaPredicted RBP21.51■■□□□ 1.03
UPF1-207ENST00000599848 SERPINB9P50453 376 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 ZNF280DQ6N043 979 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 ACTR5Q9H9F9 607 aaPredicted RBP21.51■■□□□ 1.03
UPF1-207ENST00000599848 KLHL11Q9NVR0 708 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 NFE2Q16621 373 aaPredicted RBP21.51■■□□□ 1.03
UPF1-207ENST00000599848 SNF8Q96H20 258 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 CCSER1Q9C0I3 900 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 MAD2L2Q9UI95 211 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 MSRAQ9UJ68 235 aa21.51■■□□□ 1.03
UPF1-207ENST00000599848 KRT14P02533 472 aa21.5■■□□□ 1.03
UPF1-207ENST00000599848 ATP2C1P98194 919 aaPredicted RBP21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms