RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 LHX6Q9UPM6 363 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 F5P12259 2224 aa9.54□□□□□ -0.88
SHKBP1-220ENST00000599716 TEX15Q9BXT5 2789 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 SHISA7A6NL88 538 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 TAF4O00268 1085 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 LAMTOR5O43504 91 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 B3GAT3O94766 335 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 HOXC13P31276 330 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 CDR1P51861 262 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 GRM2Q14416 872 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 PCBP1Q15365 356 aaKnown RBP eCLIP9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 ZNF174Q15697 407 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 LPAL2Q16609 132 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 PABPC1LQ4VXU2 614 aaKnown RBP9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 NT5DC1Q5TFE4 455 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 TANGO2Q6ICL3 276 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 ZBTB8OSQ8IWT0 167 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 DDX1Q92499 740 aaKnown RBP9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 DDX27Q96GQ7 796 aaKnown RBP9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 CCDC113Q9H0I3 377 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 LTB4R2Q9NPC1 389 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 HEBP1Q9NRV9 189 aa9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 NDRG2Q9UN36 371 aaKnown RBP9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 SPTAN1Q13813 2472 aaKnown RBP9.53□□□□□ -0.88
SHKBP1-220ENST00000599716 ARHGEF35A5YM69 484 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 N4BP3O15049 544 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 XYLBO75191 536 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 RHOP08100 348 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 HNRNPA1P09651 372 aaKnown RBP eCLIP9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 HARSP12081 509 aaKnown RBP9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 GJA1P17302 382 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 FGFR3P22607 806 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 TGM1P22735 817 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 CCR2P41597 374 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 CREMQ03060 361 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 RING1Q06587 406 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 RAB33AQ14088 237 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 MAPK6Q16659 721 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 PADI6Q6TGC4 694 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 UNQ6494/PRO21346Q6UXR6 183 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 GPIHBP1Q8IV16 184 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 FAM177A1Q8N128 213 aaPredicted RBP9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 DEPTORQ8TB45 409 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 GTF3C6Q969F1 213 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 PPP1R10Q96QC0 940 aaKnown RBP9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 CORO1BQ9BR76 489 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 DDX23Q9BUQ8 820 aaKnown RBP9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 BCO2Q9BYV7 579 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 BRMS1Q9HCU9 246 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 MTRRQ9UBK8 725 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 SSUH2Q9Y2M2 353 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 MRPS23Q9Y3D9 190 aaKnown RBP9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 TICRRQ7Z2Z1 1910 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 NCANO14594 1321 aa9.52□□□□□ -0.89
SHKBP1-220ENST00000599716 WDR27A2RRH5 827 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 ACKR2O00590 384 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 MEFVO15553 781 aaPredicted RBP9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 SEC24AO95486 1093 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 CYP11B2P19099 503 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 FCARP24071 287 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 ROR1Q01973 937 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 FZD5Q13467 585 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 UPP1Q16831 310 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 FAM187BQ17R55 369 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 SEZ6Q53EL9 994 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 ATF7IP2Q5U623 682 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 MTSS1LQ765P7 747 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 LURAP1LQ8IV03 231 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 GPR65Q8IYL9 337 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 HS6ST3Q8IZP7 471 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 MCPH1Q8NEM0 835 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 WASF1Q92558 559 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 C18orf25Q96B23 403 aaPredicted RBP9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 SHDQ96IW2 340 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 PRIMPOLQ96LW4 560 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 ZSWIM3Q96MP5 696 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 ZMAT2Q96NC0 199 aaKnown RBP9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 SMG5Q9UPR3 1016 aaKnown RBP9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 SDK1Q7Z5N4 2213 aa9.51□□□□□ -0.89
SHKBP1-220ENST00000599716 SMIM28A0A1B0GU29 152 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 TMEM8BA6NDV4 472 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 PP2D1A8MPX8 630 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 C1QTNF9BB2RNN3 333 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 C1QTNF9P0C862 333 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 VIPR2P41587 438 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 NAMPTP43490 491 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 SPAG1Q07617 926 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 MTAPQ13126 283 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 ZNF528Q3MIS6 628 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 FAM78AQ5JUQ0 283 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 ZBTB45Q96K62 511 aaPredicted RBP9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 NACC1Q96RE7 527 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 ADPGKQ9BRR6 497 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 CDT1Q9H211 546 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 BHMT2Q9H2M3 363 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 CYP4F11Q9HBI6 524 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 TUFT1Q9NNX1 390 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 PARD6AQ9NPB6 346 aa9.5□□□□□ -0.89
SHKBP1-220ENST00000599716 ZFP37Q9Y6Q3 630 aaPredicted RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms