RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 CXCL16Q9H2A7 254 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 HCSTQ9UBK5 93 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 ITGA11Q9UKX5 1188 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 MTUS1Q9ULD2 1270 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 CTNND2Q9UQB3 1225 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 SSX2IPQ9Y2D8 614 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 TRANK1O15050 2925 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 RALGAPA2Q2PPJ7 1873 aa17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 SF3B1O75533 1304 aaKnown RBP eCLIP17.92■□□□□ 0.46
SHKBP1-219ENST00000599575 ARHGEF37A1IGU5 675 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 CASTOR2A6NHX0 329 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 PODXLO00592 558 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 B4GALT3O60512 393 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 TADA2AO75478 443 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 B3GAT3O94766 335 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 EFEMP2O95967 443 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 TNNC2P02585 160 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 ITGB1P05556 798 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 NFICP08651 508 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 TMEM191BP0C7N4 346 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 TNNI1P19237 187 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 GTF2H1P32780 548 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 CLCNKBP51801 687 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 PMS1P54277 932 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 TFAMQ00059 246 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 SOX4Q06945 474 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 GRIN2CQ14957 1233 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 FRMD5Q7Z6J6 570 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 SPPL3Q8TCT6 385 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 C18orf25Q96B23 403 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 GAS2L1Q99501 681 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 NGRNQ9NPE2 291 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 DPP3Q9NY33 737 aa17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 R3HCC1Q9Y3T6 440 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-219ENST00000599575 ANO9A1A5B4 782 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 CAVIN2O95810 425 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 CCDC192P0DO97 292 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 DLATP10515 647 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 CASP4P49662 377 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 VAMP7P51809 220 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 MARSP56192 900 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 BFSP1Q12934 665 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 PDXDC1Q6P996 788 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 EFCAB13Q8IY85 973 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 LRRC52Q8N7C0 313 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 CCDC127Q96BQ5 260 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 MRPL38Q96DV4 380 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 DUSP9Q99956 384 aaKnown RBP17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 CERS4Q9HA82 394 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 MARCH5Q9NX47 278 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 TUBGCP4Q9UGJ1 667 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 ARMCX3Q9UH62 379 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 PRG3Q9Y2Y8 225 aaPredicted RBP17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 GBF1Q92538 1859 aa17.9■□□□□ 0.46
SHKBP1-219ENST00000599575 FSD2A1L4K1 749 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 TRIM49BA6NDI0 452 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 PIRO00625 290 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 SOD2P04179 222 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 PBX3P40426 434 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 RBP5P82980 135 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 C9orf57Q5W0N0 161 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 RNF168Q8IYW5 571 aaPredicted RBP17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 ENOX1Q8TC92 643 aaKnown RBP17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 POF1BQ8WVV4 589 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 PPP2R3CQ969Q6 453 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 BORCS6Q96GS4 357 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 ZNF560Q96MR9 790 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 PRDM12Q9H4Q4 367 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 TLR9Q9NR96 1032 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 MTMR10Q9NXD2 777 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 NUB1Q9Y5A7 615 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 IRAK3Q9Y616 596 aa17.89■□□□□ 0.45
SHKBP1-219ENST00000599575 CITO14578 2027 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 NT5C1B-RDH14C9J2C7 533 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 LPXNO60711 386 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 KIF4AO95239 1232 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 AARSP49588 968 aaKnown RBP eCLIP17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 CREMQ03060 361 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 TYRO3Q06418 890 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 SPAG1Q07617 926 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 USP41Q3LFD5 358 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 TIGD5Q53EQ6 642 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 FUT10Q6P4F1 479 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 SPRED2Q7Z698 418 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 FAM114A1Q8IWE2 563 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 C1orf127Q8N9H9 656 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 PAAF1Q9BRP4 392 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 THAP9Q9H5L6 903 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 GOLGA2P5Q9HBQ8 144 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 ALG13Q9NP73 1137 aaKnown RBP17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 CHST7Q9NS84 486 aa17.88■□□□□ 0.45
SHKBP1-219ENST00000599575 EPOPA6NHQ4 379 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 LRRIQ3A6PVS8 624 aaPredicted RBP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 SYN3O14994 580 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 GRM6O15303 877 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 STAU1O95793 577 aaKnown RBP17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 C1RP00736 705 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 CTSAP10619 480 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 ATICP31939 592 aa17.87■□□□□ 0.45
SHKBP1-219ENST00000599575 WNT7BP56706 349 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms