RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 EXOC7Q9UPT5 735 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 NOC2LQ9Y3T9 749 aaKnown RBP10.3□□□□□ -0.76
TRIM28-208ENST00000597172 NFE2L3Q9Y4A8 694 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 TRPV2Q9Y5S1 764 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 MYH11P35749 1972 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 PHLPP2Q6ZVD8 1323 aa10.3□□□□□ -0.76
TRIM28-208ENST00000597172 DSPP15924 2871 aaKnown RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 BPTFQ12830 3046 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 BECN2A8MW95 431 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 TSPAN1O60635 241 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 CAND2O75155 1236 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 ZIC2O95409 532 aaPredicted RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 NR3C1P04150 777 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 LINC00271P0C7V0 271 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 ZNF18P17022 549 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 NPR3P17342 541 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 PROZP22891 400 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 HOXA11P31270 313 aaPredicted RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 SNRPFP62306 86 aaKnown RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 FKBP3Q00688 224 aaKnown RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 ADAM9Q13443 819 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 PLEKHG4Q58EX7 1191 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 CDKAL1Q5VV42 579 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 ZPBP2Q6X784 338 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 SLC9A9Q8IVB4 645 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 C12orf56Q8IXR9 622 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 CRIPAKQ8N1N5 446 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 CSGALNACT2Q8N6G5 542 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 RIN2Q8WYP3 895 aaPredicted RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 CLP1Q92989 425 aaKnown RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 SCLT1Q96NL6 688 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 TSG101Q99816 390 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 CBWD1Q9BRT8 395 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 MRPL4Q9BYD3 311 aaKnown RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 PCIF1Q9H4Z3 704 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 TLE6Q9H808 572 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 AGO3Q9H9G7 860 aaKnown RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 IGSF5Q9NSI5 407 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 PRMT7Q9NVM4 692 aaPredicted RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 CGNQ9P2M7 1197 aaKnown RBP10.29□□□□□ -0.76
TRIM28-208ENST00000597172 NCDNQ9UBB6 729 aa10.29□□□□□ -0.76
TRIM28-208ENST00000597172 A0A0B4J269 797 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 A0A1B0GUA9 196 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-208ENST00000597172 M0QZ92 97 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 HNRNPDLO14979 420 aaKnown RBP10.28□□□□□ -0.76
TRIM28-208ENST00000597172 AP5Z1O43299 807 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 AKAP3O75969 853 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 ATP1A3P13637 1013 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 ARF4P18085 180 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-208ENST00000597172 GARTP22102 1010 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 NR2F2P24468 414 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 DNAJB1P25685 340 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 CASP4P49662 377 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 PRPF4BQ13523 1007 aaKnown RBP10.28□□□□□ -0.76
TRIM28-208ENST00000597172 MYBPC2Q14324 1141 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 LPIN1Q14693 890 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 HSP90AA4PQ58FG1 418 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 FBXO47Q5MNV8 452 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 VARS2Q5ST30 1063 aaKnown RBP10.28□□□□□ -0.76
TRIM28-208ENST00000597172 ATF7IP2Q5U623 682 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 EEF1DP3Q658K8 133 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 HS2ST1Q7LGA3 356 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 CATSPER4Q7RTX7 472 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 FILIP1Q7Z7B0 1213 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 FAM228AQ86W67 206 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 CDR2LQ86X02 465 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-208ENST00000597172 GOLGA5Q8TBA6 731 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 SPPL3Q8TCT6 385 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 SEPT8Q92599 483 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 BICD1Q96G01 975 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 CPB2Q96IY4 423 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 PRIMPOLQ96LW4 560 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 S1PR5Q9H228 398 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 THAP9Q9H5L6 903 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 PDZD7Q9H5P4 517 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 HSPBP1Q9NZL4 362 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 TNFSF13BQ9Y275 285 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 CNTNAP2Q9UHC6 1331 aa10.28□□□□□ -0.76
TRIM28-208ENST00000597172 SPEGQ15772 3267 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 GOLGA6L3A6NEY3 463 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 LRRC10BA6NIK2 292 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 C2CD4DB7Z1M9 353 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 CETN3O15182 167 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 FAM189A1O60320 539 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 RPS6KA5O75582 802 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 TOM1L1O75674 476 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 PROS1P07225 676 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 ASGR2P07307 311 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 LIG4P49917 911 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 CYP2J2P51589 502 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 RBM10P98175 930 aaKnown RBP10.27□□□□□ -0.77
TRIM28-208ENST00000597172 MCL1Q07820 350 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 PCBP1Q15365 356 aaKnown RBP eCLIP10.27□□□□□ -0.77
TRIM28-208ENST00000597172 TPD52L1Q16890 204 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-208ENST00000597172 UVSSAQ2YD98 709 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 ARMCX5Q6P1M9 558 aa10.27□□□□□ -0.77
TRIM28-208ENST00000597172 CRELD2Q6UXH1 353 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-208ENST00000597172 APTXQ7Z2E3 356 aaKnown RBP10.27□□□□□ -0.77
TRIM28-208ENST00000597172 NOC3LQ8WTT2 800 aaKnown RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms