RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 HSPBP1Q9NZL4 362 aa12.04□□□□□ -0.48
LIG1-211ENST00000596457 TCF20Q9UGU0 1960 aaKnown RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 C2orf71A6NGG8 1288 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 I3L4J1 428 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 XPOTO43592 962 aaKnown RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 EXTL3O43909 919 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 RHOBTB3O94955 611 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 URODP06132 367 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 NFICP08651 508 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 CTSAP10619 480 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 GLUD2P49448 558 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 NDUFV1P49821 464 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 TFF2Q03403 129 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 TMEM132DQ14C87 1099 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 CLUL1Q15846 466 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 UPP1Q16831 310 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 FAM171A1Q5VUB5 890 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 CD302Q8IX05 232 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 SMYD4Q8IYR2 804 aaPredicted RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 MRPL43Q8N983 215 aaKnown RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 BEST2Q8NFU1 509 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 RIN2Q8WYP3 895 aaPredicted RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 DDX27Q96GQ7 796 aaKnown RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 NECAB3Q96P71 396 aaPredicted RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 UBE2ZQ9H832 354 aaPredicted RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 MRPL17Q9NRX2 175 aaKnown RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 AGPAT3Q9NRZ7 376 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 RBAKQ9NYW8 714 aaPredicted RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 UBQLN1Q9UMX0 589 aaKnown RBP12.03□□□□□ -0.48
LIG1-211ENST00000596457 NUB1Q9Y5A7 615 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 PCDHA5Q9Y5H7 936 aa12.03□□□□□ -0.48
LIG1-211ENST00000596457 ZNF233A6NK53 670 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 KIF20AO95235 890 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 IL18RAPO95256 599 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 KCNA5P22460 613 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 KLRC2P26717 231 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 RPL9P32969 192 aaKnown RBP12.02□□□□□ -0.49
LIG1-211ENST00000596457 MCM4P33991 863 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 RBM10P98175 930 aaKnown RBP12.02□□□□□ -0.49
LIG1-211ENST00000596457 TFAMQ00059 246 aaKnown RBP12.02□□□□□ -0.49
LIG1-211ENST00000596457 ADAM15Q13444 863 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 KCNB1Q14721 858 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 PTPN14Q15678 1187 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 CAMK4Q16566 473 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 DUSP6Q16828 381 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 BMT2Q1RMZ1 405 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 USP41Q3LFD5 358 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 LEXMQ3ZCV2 418 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 LMBRD2Q68DH5 695 aaPredicted RBP12.02□□□□□ -0.49
LIG1-211ENST00000596457 PRSS55Q6UWB4 352 aaPredicted RBP12.02□□□□□ -0.49
LIG1-211ENST00000596457 CBWD2Q8IUF1 395 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 C3orf58Q8NDZ4 430 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 PABPC5Q96DU9 382 aaKnown RBP12.02□□□□□ -0.49
LIG1-211ENST00000596457 GBP4Q96PP9 640 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 EMILIN2Q9BXX0 1053 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 ASB7Q9H672 318 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 PDE11AQ9HCR9 933 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 RMND1Q9NWS8 449 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 STK39Q9UEW8 545 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 FAM50BQ9Y247 325 aa12.02□□□□□ -0.49
LIG1-211ENST00000596457 SF3B1O75533 1304 aaKnown RBP eCLIP12.02□□□□□ -0.491e-8■■■■■ 160.4
LIG1-211ENST00000596457 SPDYE4A6NLX3 237 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 H3BQ06 376 aaPredicted RBP12.01□□□□□ -0.49
LIG1-211ENST00000596457 BIN1O00499 593 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 KIAA0391O15091 583 aaKnown RBP12.01□□□□□ -0.49
LIG1-211ENST00000596457 TRAPPC3O43617 180 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 CALUO43852 315 aaPredicted RBP12.01□□□□□ -0.49
LIG1-211ENST00000596457 EXOC3O60645 756 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 CLASP2O75122 1294 aaKnown RBP12.01□□□□□ -0.49
LIG1-211ENST00000596457 RPL17P18621 184 aaKnown RBP12.01□□□□□ -0.49
LIG1-211ENST00000596457 KCNQ1P51787 676 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 WNT7BP56706 349 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 DLX2Q07687 328 aaPredicted RBP12.01□□□□□ -0.49
LIG1-211ENST00000596457 TMEM31Q5JXX7 168 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 SPATA1Q5VX52 437 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 CD300LGQ6UXG3 332 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 DSTYKQ6XUX3 929 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 BRSK2Q8IWQ3 736 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 XXYLT1Q8NBI6 393 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 FAM84AQ96KN4 292 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 KLHL5Q96PQ7 755 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 TTPALQ9BTX7 342 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 APOL5Q9BWW9 433 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 DPP3Q9NY33 737 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 BARX2Q9UMQ3 279 aaPredicted RBP12.01□□□□□ -0.49
LIG1-211ENST00000596457 SSX2IPQ9Y2D8 614 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 CHD7Q9P2D1 2997 aa12.01□□□□□ -0.49
LIG1-211ENST00000596457 PLXNA3P51805 1871 aa12□□□□□ -0.49
LIG1-211ENST00000596457 VWA8A3KMH1 1905 aa12□□□□□ -0.49
LIG1-211ENST00000596457 TRANK1O15050 2925 aa12□□□□□ -0.49
LIG1-211ENST00000596457 FSD2A1L4K1 749 aa12□□□□□ -0.49
LIG1-211ENST00000596457 PDXKO00764 312 aa12□□□□□ -0.49
LIG1-211ENST00000596457 PPEF2O14830 753 aa12□□□□□ -0.49
LIG1-211ENST00000596457 ADRB2P07550 413 aa12□□□□□ -0.49
LIG1-211ENST00000596457 KRT19P08727 400 aa12□□□□□ -0.49
LIG1-211ENST00000596457 CNPP09543 421 aaKnown RBP12□□□□□ -0.49
LIG1-211ENST00000596457 TMEM191BP0C7N4 346 aa12□□□□□ -0.49
LIG1-211ENST00000596457 CYP3A5P20815 502 aa12□□□□□ -0.49
LIG1-211ENST00000596457 TKTP29401 623 aaKnown RBP12□□□□□ -0.49
LIG1-211ENST00000596457 SNRPFP62306 86 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms