RNA–Protein interactions for RNA: ENST00000589753.1

ATG4D-211, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-211ENST00000589753 FMO5P49326 533 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 MXI1P50539 228 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 GUCY2FP51841 1108 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 COPB1P53618 953 aaKnown RBP16.4■□□□□ 0.22
ATG4D-211ENST00000589753 SOX4Q06945 474 aaPredicted RBP16.4■□□□□ 0.22
ATG4D-211ENST00000589753 DSC1Q08554 894 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 BIRC3Q13489 604 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 MIIPQ5JXC2 388 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 TDRD10Q5VZ19 366 aaKnown RBP16.4■□□□□ 0.22
ATG4D-211ENST00000589753 KRT39Q6A163 491 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 CHRDL2Q6WN34 429 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 SV2AQ7L0J3 742 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 APTXQ7Z2E3 356 aaKnown RBP16.4■□□□□ 0.22
ATG4D-211ENST00000589753 TRAPPC11Q7Z392 1133 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 ZNF280BQ86YH2 543 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 TDHQ8IZJ6 230 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 NDST4Q9H3R1 872 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 GOLGA2P5Q9HBQ8 144 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 ITGA11Q9UKX5 1188 aa16.4■□□□□ 0.22
ATG4D-211ENST00000589753 TDRD15B5MCY1 1934 aaKnown RBP16.4■□□□□ 0.22
ATG4D-211ENST00000589753 PES1O00541 588 aaKnown RBP16.39■□□□□ 0.21
ATG4D-211ENST00000589753 LRPAP1P30533 357 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 FANCCQ00597 558 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 ZACNQ401N2 412 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 CBWD6Q4V339 395 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 CBWD3Q5JTY5 395 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 CBWD5Q5RIA9 395 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 C15orf39Q6ZRI6 1047 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 COLGALT2Q8IYK4 626 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 C1orf127Q8N9H9 656 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 UROC1Q96N76 676 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 NRDE2Q9H7Z3 1164 aa16.39■□□□□ 0.21
ATG4D-211ENST00000589753 CASTOR2A6NHX0 329 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 GRXCR1A8MXD5 290 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 PMM2O15305 246 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 P4HA2O15460 535 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 B4GALT3O60512 393 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 ZC3H11AO75152 810 aaKnown RBP eCLIP16.38■□□□□ 0.21
ATG4D-211ENST00000589753 ITGB3P05106 788 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 KRT19P08727 400 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 RPL9P32969 192 aaKnown RBP16.38■□□□□ 0.21
ATG4D-211ENST00000589753 RABGGTBP53611 331 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 MYL7Q01449 175 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 CETN1Q12798 172 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 TRPC3Q13507 836 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 UVSSAQ2YD98 709 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 FILIP1LQ4L180 1135 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 FAM109BQ6ICB4 259 aaPredicted RBP16.38■□□□□ 0.21
ATG4D-211ENST00000589753 TMEM130Q8N3G9 435 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 FIBCD1Q8N539 461 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 SP7Q8TDD2 431 aaPredicted RBP16.38■□□□□ 0.21
ATG4D-211ENST00000589753 DDX27Q96GQ7 796 aaKnown RBP16.38■□□□□ 0.21
ATG4D-211ENST00000589753 TMEM175Q9BSA9 504 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 PRO3102Q9H379 93 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 CWH43Q9H720 699 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 HCSTQ9UBK5 93 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 DNAJB4Q9UDY4 337 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 SIX4Q9UIU6 781 aa16.38■□□□□ 0.21
ATG4D-211ENST00000589753 R3HCC1Q9Y3T6 440 aaKnown RBP16.38■□□□□ 0.21
ATG4D-211ENST00000589753 MRPL42Q9Y6G3 142 aaKnown RBP16.38■□□□□ 0.21
ATG4D-211ENST00000589753 TNRC18O15417 2968 aaPredicted RBP16.37■□□□□ 0.21
ATG4D-211ENST00000589753 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.37■□□□□ 0.21
ATG4D-211ENST00000589753 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.37■□□□□ 0.21
ATG4D-211ENST00000589753 LGALS16A8MUM7 142 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 PODXLO00592 558 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 POLR2BP30876 1174 aaKnown RBP16.37■□□□□ 0.21
ATG4D-211ENST00000589753 PIK3CAP42336 1068 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 CLCNKBP51801 687 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 RBP5P82980 135 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 UPP1Q16831 310 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 FKBP15Q5T1M5 1219 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 SPOUT1Q5T280 376 aaKnown RBP16.37■□□□□ 0.21
ATG4D-211ENST00000589753 C9orf57Q5W0N0 161 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 FBXL13Q8NEE6 735 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 CXorf38Q8TB03 319 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 TAS1R2Q8TE23 839 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 CACNG4Q9UBN1 327 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 AGAP1Q9UPQ3 857 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 PCDHA11Q9Y5I1 949 aa16.37■□□□□ 0.21
ATG4D-211ENST00000589753 A0A1B0GTH6 734 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 ANO9A1A5B4 782 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 PIRO00625 290 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 VNN1O95497 513 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 CST3P01034 146 aaPredicted RBP16.36■□□□□ 0.21
ATG4D-211ENST00000589753 HLA-DRAP01903 254 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 ALDH2P05091 517 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 LAG3P18627 525 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 OR1G1P47890 313 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 UBASH3AP57075 661 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 PLCB2Q00722 1185 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 NCOA4Q13772 614 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 SCARA3Q6AZY7 606 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 RABGGTAQ92696 567 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 NAP1L5Q96NT1 182 aaPredicted RBP16.36■□□□□ 0.21
ATG4D-211ENST00000589753 PAAF1Q9BRP4 392 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 RTN4Q9NQC3 1192 aaKnown RBP16.36■□□□□ 0.21
ATG4D-211ENST00000589753 RAB20Q9NX57 234 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 IFNKQ9P0W0 207 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 FAN1Q9Y2M0 1017 aa16.36■□□□□ 0.21
ATG4D-211ENST00000589753 COQ4Q9Y3A0 265 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms