RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 UNKLQ9H9P5 680 aaKnown RBP4.53□□□□□ -1.68
VPS4B-203ENST00000588323 DMRT3Q9NQL9 472 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 FBXO34Q9NWN3 711 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 SCOCQ9UIL1 159 aa4.53□□□□□ -1.68
VPS4B-203ENST00000588323 PEX1O43933 1283 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 PROP1O75360 226 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 HMGB1P09429 215 aaKnown RBP4.52□□□□□ -1.69
VPS4B-203ENST00000588323 ABCG1P45844 678 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 STRN3Q13033 797 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 GEN1Q17RS7 908 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 ANO4Q32M45 955 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 TAF7LQ5H9L4 462 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 TOR2AQ5JU69 321 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 SEM1Q6ZVN7 128 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 UBE3BQ7Z3V4 1068 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 JAZF1Q86VZ6 243 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 LNX2Q8N448 690 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 HOXB13Q92826 284 aaPredicted RBP4.52□□□□□ -1.69
VPS4B-203ENST00000588323 MARS2Q96GW9 593 aaKnown RBP4.52□□□□□ -1.69
VPS4B-203ENST00000588323 MYOCQ99972 504 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 ASB6Q9NWX5 421 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 SLC23A1Q9UHI7 598 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 ACTL7AQ9Y615 435 aa4.52□□□□□ -1.69
VPS4B-203ENST00000588323 TRGV11A0A075B6L2 103 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 ORC4O43929 436 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 FPR1P21462 350 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 PPP3CAQ08209 521 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 MALLQ13021 153 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 KCNK18Q7Z418 384 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 FITM2Q8N6M3 262 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 SSH3Q8TE77 659 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 LMBR1Q8WVP7 490 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 MED15Q96RN5 788 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 PNKPQ96T60 521 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 SLC29A3Q9BZD2 475 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 RNF7Q9UBF6 113 aa4.51□□□□□ -1.69
VPS4B-203ENST00000588323 RUVBL1Q9Y265 456 aaKnown RBP4.51□□□□□ -1.69
VPS4B-203ENST00000588323 DNAJC9-AS1A6NH13 148 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 GPR32O75388 356 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 GSPT1P15170 499 aaKnown RBP4.5□□□□□ -1.69
VPS4B-203ENST00000588323 PCSK1P29120 753 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 MCAMP43121 646 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 SCAND1P57086 179 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 NOMO3P69849 1222 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 SRSF4Q08170 494 aaKnown RBP4.5□□□□□ -1.69
VPS4B-203ENST00000588323 NOMO2Q5JPE7 1267 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 RNF180Q86T96 592 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 CMIPQ8IY22 773 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 NUP133Q8WUM0 1156 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 SMG7Q92540 1137 aaKnown RBP4.5□□□□□ -1.69
VPS4B-203ENST00000588323 UROC1Q96N76 676 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 ORAI2Q96SN7 254 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 KMT5AQ9NQR1 393 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 IL17RBQ9NRM6 502 aa4.5□□□□□ -1.69
VPS4B-203ENST00000588323 ZFPL1O95159 310 aa4.49□□□□□ -1.69
VPS4B-203ENST00000588323 FOLR3P41439 243 aa4.49□□□□□ -1.69
VPS4B-203ENST00000588323 SLC5A3P53794 718 aa4.49□□□□□ -1.69
VPS4B-203ENST00000588323 SRSF2Q01130 221 aaKnown RBP4.49□□□□□ -1.69
VPS4B-203ENST00000588323 SF3B3Q15393 1217 aaKnown RBP4.49□□□□□ -1.69
VPS4B-203ENST00000588323 GRASPQ7Z6J2 395 aaPredicted RBP4.49□□□□□ -1.69
VPS4B-203ENST00000588323 CCHCR1Q8TD31 782 aa4.49□□□□□ -1.69
VPS4B-203ENST00000588323 CYFIP2Q96F07 1278 aa4.49□□□□□ -1.69
VPS4B-203ENST00000588323 PUS7Q96PZ0 661 aaKnown RBP4.49□□□□□ -1.69
VPS4B-203ENST00000588323 GSTO2Q9H4Y5 243 aa4.49□□□□□ -1.69
VPS4B-203ENST00000588323 HSFX1Q9UBD0 423 aa4.49□□□□□ -1.69
VPS4B-203ENST00000588323 ARPP21Q9UBL0 812 aaPredicted RBP4.49□□□□□ -1.69
VPS4B-203ENST00000588323 TCRBV7S2A1N4TA0A589 114 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 CCDC151A5D8V7 595 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 CDHR4A6H8M9 788 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 FAM171A2A8MVW0 826 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 ENPP3O14638 875 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 KIAA0391O15091 583 aaKnown RBP4.48□□□□□ -1.69
VPS4B-203ENST00000588323 YY2O15391 372 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 BRINP1O60477 761 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 SLC6A9P48067 706 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 GYS2P54840 703 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 CREMQ03060 361 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 MGAT2Q10469 447 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 MTM1Q13496 603 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 SEPT2Q15019 361 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 ATP2B3Q16720 1220 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.48□□□□□ -1.69
VPS4B-203ENST00000588323 ZNF788Q6ZQV5 615 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 MICALCLQ6ZW33 695 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 STRA8Q7Z7C7 330 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 SH2D3CQ8N5H7 860 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 UBR7Q8N806 425 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.48□□□□□ -1.69
VPS4B-203ENST00000588323 TBC1D15Q8TC07 691 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 ANKS1AQ92625 1134 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 MANSC1Q9H8J5 431 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 CPNE5Q9HCH3 593 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 DNAJC28Q9NX36 388 aa4.48□□□□□ -1.69
VPS4B-203ENST00000588323 COL3A1P02461 1466 aaPredicted RBP4.48□□□□□ -1.69
VPS4B-203ENST00000588323 KRTAP29-1A8MX34 341 aaPredicted RBP4.47□□□□□ -1.69
VPS4B-203ENST00000588323 ITGB6P18564 788 aa4.47□□□□□ -1.69
VPS4B-203ENST00000588323 GPD1P21695 349 aa4.47□□□□□ -1.69
VPS4B-203ENST00000588323 FAPQ12884 760 aa4.47□□□□□ -1.69
VPS4B-203ENST00000588323 KAZNQ674X7 775 aa4.47□□□□□ -1.69
VPS4B-203ENST00000588323 VWA1Q6PCB0 445 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms