RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 PDILTQ8N807 584 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 SPRYD3Q8NCJ5 442 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 APPL2Q8NEU8 664 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 FAM212AQ96EL1 285 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 FIZ1Q96SL8 496 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 PRKD2Q9BZL6 878 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 HAPLN2Q9GZV7 340 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 WDR6Q9NNW5 1121 aaKnown RBP13.48□□□□□ -0.25
SS18-225ENST00000585121 MTRRQ9UBK8 725 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 LIMD1Q9UGP4 676 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 FBXW11Q9UKB1 542 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 UBQLN1Q9UMX0 589 aaKnown RBP13.48□□□□□ -0.25
SS18-225ENST00000585121 SORCS3Q9UPU3 1222 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 PCDHB13Q9Y5F0 798 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 BACE2Q9Y5Z0 518 aa13.48□□□□□ -0.25
SS18-225ENST00000585121 MYH11P35749 1972 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 A0A0B4J269 797 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 TTC26A0AVF1 554 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 TMEM221A6NGB7 291 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 LACTBL1A8MY62 500 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 I3L4J1 428 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 M0R296 226 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 CUTAO60888 179 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 XYLBO75191 536 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 F13A1P00488 732 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 HNRNPA1P09651 372 aaKnown RBP eCLIP13.47□□□□□ -0.25
SS18-225ENST00000585121 GBP2P32456 591 aaPredicted RBP13.47□□□□□ -0.25
SS18-225ENST00000585121 MCM4P33991 863 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 AMPD3Q01432 767 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 SIGLEC14Q08ET2 396 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 MTMR3Q13615 1198 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 ALCAMQ13740 583 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 RAB33AQ14088 237 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 UVSSAQ2YD98 709 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 FOXD4L6Q3SYB3 417 aaPredicted RBP13.47□□□□□ -0.25
SS18-225ENST00000585121 ZC2HC1CQ53FD0 456 aaPredicted RBP13.47□□□□□ -0.25
SS18-225ENST00000585121 ADALQ6DHV7 355 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 FOXD4L3Q6VB84 417 aaPredicted RBP13.47□□□□□ -0.25
SS18-225ENST00000585121 RTL10Q7L3V2 364 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 CCDC65Q8IXS2 484 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 UBALD2Q8IYN6 164 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 C3orf58Q8NDZ4 430 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 BEST2Q8NFU1 509 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 KCNG4Q8TDN1 519 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 ACCSQ96QU6 501 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 CUEDC2Q9H467 287 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 CFAP45Q9UL16 551 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 CDY1Q9Y6F8 540 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 CLUHO75153 1309 aa13.47□□□□□ -0.25
SS18-225ENST00000585121 GCNT3O95395 438 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 C8AP07357 584 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 ELF1P32519 619 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 TNFSF9P41273 254 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 SPAG1Q07617 926 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 ENOX2Q16206 610 aaKnown RBP13.46□□□□□ -0.25
SS18-225ENST00000585121 VARS2Q5ST30 1063 aaKnown RBP13.46□□□□□ -0.25
SS18-225ENST00000585121 CD300LGQ6UXG3 332 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 STXBP4Q6ZWJ1 553 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 IQUBQ8NA54 791 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 POMGNT1Q8WZA1 660 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 PBXIP1Q96AQ6 731 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 ZNF707Q96C28 371 aaPredicted RBP13.46□□□□□ -0.25
SS18-225ENST00000585121 DNAJC19Q96DA6 116 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 SUSD3Q96L08 255 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 PANK4Q9NVE7 773 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 TBC1D7Q9P0N9 293 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 TUBGCP4Q9UGJ1 667 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 RAPGEFL1Q9UHV5 662 aa13.46□□□□□ -0.25
SS18-225ENST00000585121 AGO2Q9UKV8 859 aaKnown RBP13.46□□□□□ -0.25
SS18-225ENST00000585121 ANKRD63C9JTQ0 380 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 MEFVO15553 781 aaPredicted RBP13.45□□□□□ -0.26
SS18-225ENST00000585121 IGFBP6P24592 240 aaPredicted RBP13.45□□□□□ -0.26
SS18-225ENST00000585121 HOXA9P31269 272 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 ME1P48163 572 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 AXDND1Q5T1B0 1012 aaPredicted RBP13.45□□□□□ -0.26
SS18-225ENST00000585121 L1TD1Q5T7N2 865 aaKnown RBP13.45□□□□□ -0.26
SS18-225ENST00000585121 HFE2Q6ZVN8 426 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 BMP8AQ7Z5Y6 402 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 SUGP1Q8IWZ8 645 aaKnown RBP13.45□□□□□ -0.26
SS18-225ENST00000585121 SYCP3Q8IZU3 236 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 TNMDQ9H2S6 317 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 OLFML3Q9NRN5 406 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 FAM13BQ9NYF5 915 aa13.45□□□□□ -0.26
SS18-225ENST00000585121 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.45□□□□□ -0.26
SS18-225ENST00000585121 ARIH1Q9Y4X5 557 aaPredicted RBP13.45□□□□□ -0.26
SS18-225ENST00000585121 A0A087X0B3 334 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 ADAM12O43184 909 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 PAPLNO95428 1278 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 ASGR2P07307 311 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 ADRB2P07550 413 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 PAX3P23760 479 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 LRPAP1P30533 357 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 ARPP19P56211 112 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 POU5F1Q01860 360 aaKnown RBP13.44□□□□□ -0.26
SS18-225ENST00000585121 CTXN3Q4LDR2 81 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 ZBTB41Q5SVQ8 909 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 ZNF280DQ6N043 979 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 SLC39A4Q6P5W5 647 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 DSTYKQ6XUX3 929 aa13.44□□□□□ -0.26
SS18-225ENST00000585121 USP37Q86T82 979 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms