RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 SEM1Q6ZVN7 128 aa5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 NOP9Q86U38 636 aaKnown RBP5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 ARHGEF25Q86VW2 580 aa5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 ZGPATQ8N5A5 531 aaKnown RBP5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 CHAC2Q8WUX2 184 aa5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 CASKIN2Q8WXE0 1202 aa5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 MARS2Q96GW9 593 aaKnown RBP5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 AIFM2Q9BRQ8 373 aa5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 SPATA5L1Q9BVQ7 753 aa5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 UNKLQ9H9P5 680 aaKnown RBP5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 FOXJ2Q9P0K8 574 aa5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 HSFX1Q9UBD0 423 aa5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 MTO1Q9Y2Z2 717 aaKnown RBP5.61□□□□□ -1.51
SMCHD1-208ENST00000583344 ERN1O75460 977 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 MATN4O95460 622 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 IGLV2-14P01704 120 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 AMY1AP04745 511 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 VAV2P52735 878 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 NOMO3P69849 1222 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 MRPS35P82673 323 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 MGAT2Q10469 447 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 NOMO2Q5JPE7 1267 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 CT47A1Q5JQC4 288 aaPredicted RBP5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 FOXR2Q6PJQ5 311 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 FAM43AQ8N2R8 423 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 ACTRT2Q8TDY3 377 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 PTCD3Q96EY7 689 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 AHCYL2Q96HN2 611 aaKnown RBP5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 FAM30AQ9NZY2 134 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 DNM3Q9UQ16 869 aa5.6□□□□□ -1.51
SMCHD1-208ENST00000583344 TCRBV7S2A1N4TA0A589 114 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 CDHR4A6H8M9 788 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 C1RP00736 705 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 CKBP12277 381 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 MTNR1BP49286 362 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 RARRES1P49788 294 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 SLC5A3P53794 718 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 MTM1Q13496 603 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 LRCH2Q5VUJ6 765 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 COG1Q8WTW3 980 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 NELL1Q92832 810 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 SLC2A13Q96QE2 648 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 GSTO2Q9H4Y5 243 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 LRIT1Q9P2V4 623 aa5.59□□□□□ -1.51
SMCHD1-208ENST00000583344 C1QL1O75973 258 aa5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 EYA4O95677 639 aa5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 MASP1P48740 699 aa5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 SLFN5Q08AF3 891 aa5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 SSH3Q8TE77 659 aa5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 ZNF384Q8TF68 577 aa5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 SLKQ9H2G2 1235 aaPredicted RBP5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 KCTD5Q9NXV2 234 aa5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 FRMD4BQ9Y2L6 1034 aa5.58□□□□□ -1.52
SMCHD1-208ENST00000583344 ARHGEF17Q96PE2 2063 aaPredicted RBP5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 LRRC3CA6NJW4 275 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 KIAA0391O15091 583 aaKnown RBP5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 TEX33O43247 280 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 FCER1AP12319 257 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 ALAS1P13196 640 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 ATP8B2P98198 1209 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 FITM2Q8N6M3 262 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 TBC1D15Q8TC07 691 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 DPF2Q92785 391 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 RAB24Q969Q5 203 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 PDLIM2Q96JY6 352 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 KLK15Q9H2R5 256 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 SEMA4GQ9NTN9 838 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 GPR45Q9Y5Y3 372 aa5.57□□□□□ -1.52
SMCHD1-208ENST00000583344 MYBBP1AQ9BQG0 1328 aaKnown RBP5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 FAM171A2A8MVW0 826 aa5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 GPR39O43194 453 aa5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 DDCP20711 480 aa5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 CACNA2D1P54289 1103 aa5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 NUP133Q8WUM0 1156 aa5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 PNKPQ96T60 521 aa5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 IL17RBQ9NRM6 502 aa5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 ASB6Q9NWX5 421 aa5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 RSF1Q96T23 1441 aaPredicted RBP5.56□□□□□ -1.52
SMCHD1-208ENST00000583344 TRGV11A0A075B6L2 103 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 TLDC2A0PJX2 215 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 RBMXL2O75526 392 aaKnown RBP5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 SLC6A4P31645 630 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 ERVK-21P61565 698 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 FAPQ12884 760 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 SF3B3Q15393 1217 aaKnown RBP5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 SPATS2Q86XZ4 545 aaKnown RBP5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 COLGALT2Q8IYK4 626 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 LNX2Q8N448 690 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 PPM1NQ8N819 430 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 DCBLD1Q8N8Z6 715 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 Q8NA96 180 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 CYFIP2Q96F07 1278 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 TLR10Q9BXR5 811 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 FAM126AQ9BYI3 521 aaPredicted RBP5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 MANSC1Q9H8J5 431 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 DMTF1Q9Y222 760 aa5.55□□□□□ -1.52
SMCHD1-208ENST00000583344 MYADML2A6NDP7 307 aa5.54□□□□□ -1.52
SMCHD1-208ENST00000583344 CDK4P11802 303 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms